Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 319 a.a., 23S rRNA pseudouridylate synthase from Pseudomonas fluorescens FW300-N2E3

 Score =  291 bits (744), Expect = 2e-83
 Identities = 158/300 (52%), Positives = 205/300 (68%), Gaps = 9/300 (3%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           VQ +++  + AGQRIDNFL  +LK +PK+++YRILRKGEVRVNK R+K EYKL+AGD+VR
Sbjct: 11  VQLLEVSPEYAGQRIDNFLLARLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDIVR 70

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           VPPV V  ++ EP P +  L  +  LE  IV+ED  L+++NKP G AVHGGSGL++G IE
Sbjct: 71  VPPVRVPERD-EPVPLAQGL--LQRLEASIVFEDKALIVINKPCGIAVHGGSGLNYGVIE 127

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
           A R LRP  + LELVHR+DRDTSG+L++AKKRS LRHL    R   V K Y ALV G+W 
Sbjct: 128 AFRQLRPDCKELELVHRLDRDTSGLLMIAKKRSMLRHLHTALRGDGVDKRYMALVRGNWA 187

Query: 188 AECKVVNAPLLKNEVNSIVRV----NPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQ 242
           A  K V APL K+ + S  R+       GK S T F++L +F + ATL++A P+TGRTHQ
Sbjct: 188 ASIKQVRAPLGKSNLRSGERMVEVDEEEGKESVTVFKVLRRFGDFATLIEAKPITGRTHQ 247

Query: 243 IRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           IRVHT + GH IA D +YGD  F       G +RLFLHA  +    P    +L++ AP++
Sbjct: 248 IRVHTLHAGHCIAGDTKYGDDDFSKEIRDLGGKRLFLHAYMLTVSLP-DGGELKLQAPVD 306