Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 317 a.a., pseudouridine synthase, RluA family from Pseudomonas stutzeri RCH2

 Score =  314 bits (804), Expect = 2e-90
 Identities = 168/309 (54%), Positives = 217/309 (70%), Gaps = 8/309 (2%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           VQ +++  ++AGQRIDNFLRNQLK +PK+++YRILRKGEVRVNK R+K EYKL+AGD+VR
Sbjct: 11  VQILEVAPELAGQRIDNFLRNQLKGVPKTLIYRILRKGEVRVNKGRIKPEYKLQAGDLVR 70

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIE 127
           VPP+ +  + +EP P +  L  +  L+  IVYED  L++LNKP+G AVHGGSGL +G IE
Sbjct: 71  VPPLRL-AERDEPEPLAQGL--LERLDKAIVYEDKALIVLNKPAGIAVHGGSGLSYGVIE 127

Query: 128 ALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWD 187
           ALR LRP A+ LELVHR+DRDTSG+L+VAKKRS LRHL    R   V K Y ALV G W+
Sbjct: 128 ALRQLRPDAKELELVHRLDRDTSGLLMVAKKRSMLRHLHQALRGDGVDKRYMALVRGRWE 187

Query: 188 AECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAE-ATLVQASPVTGRTHQI 243
              K VNAPLLKN + S   +V V  +GK + T F +L +F E ATLV+A PVTGRTHQI
Sbjct: 188 TSKKQVNAPLLKNTLRSGERMVEVTEDGKEALTLFHVLRRFGEFATLVEAKPVTGRTHQI 247

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEA 303
           RVH ++ GH IA D +YGD  F     + G +RLFLHA  ++   P    +L + AP++ 
Sbjct: 248 RVHARHAGHSIAGDSKYGDEEFTREIRELGGKRLFLHAYALRVPLP-DGGELSLEAPVDE 306

Query: 304 HLEQALTKM 312
              + L ++
Sbjct: 307 MWARTLERL 315