Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 313 a.a., ribosomal large subunit pseudouridine synthase D from Synechococcus elongatus PCC 7942

 Score =  132 bits (332), Expect = 1e-35
 Identities = 90/311 (28%), Positives = 155/311 (49%), Gaps = 27/311 (8%)

Query: 16  DMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVEV 75
           ++  +R+D +L  Q  ++ ++ + +++  G++RVN          E  D  R  P   + 
Sbjct: 11  EVPSERLDRWLAQQWPHLSRARLQKLIAAGQLRVNG---------EVCDQKRWQPRLGDR 61

Query: 76  KENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI--------- 126
            E E  P         E+   I+YED  LLI+NK  G  VH  +G   G +         
Sbjct: 62  LELEMPPTEAIALAPEEIPLDILYEDADLLIVNKAVGMVVHPAAGHDTGTLVHALLAHCG 121

Query: 127 EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW 186
           ++L  +  + R   +VHR+D+DT+G ++VAK  +AL  LQ Q R+KT Q+ Y  +V G  
Sbjct: 122 DSLTGIGGEQR-PGIVHRLDKDTTGAMVVAKTEAALLSLQDQIRQKTAQREYLGVVFGSP 180

Query: 187 DAECKVVNAPLLKN----EVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQ 242
             +   V  P+ ++    +  ++V +   G+ + T +++ E+     L+     TGRTHQ
Sbjct: 181 RQDSGQVEEPIGRHLRDRKRMAVVPIERGGRWALTHWQVRERLGNYALLHYRLATGRTHQ 240

Query: 243 IRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           IRVH+ +MGHP+  D  YG+ R    +    ++   LHA  +   HP + + + + APL 
Sbjct: 241 IRVHSHHMGHPLVGDPLYGNGR----SLGVNLQGQALHAWRLSLQHPRTGEVIAVEAPLP 296

Query: 303 AHLEQALTKMR 313
           A  ++ L  +R
Sbjct: 297 AEFQRLLRVLR 307