Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., ribosomal large subunit pseudouridine synthase C protein from Sinorhizobium meliloti 1021

 Score =  167 bits (424), Expect = 2e-46
 Identities = 105/314 (33%), Positives = 177/314 (56%), Gaps = 15/314 (4%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           ++   +D D AG R+D + +     +    + ++LR G++RV+  R K++ +++ G  +R
Sbjct: 4   IEHRQVDSDEAGMRLDRWFKVHFPGLGFGPLQKLLRSGQIRVDGARAKSDTRIQPGQTIR 63

Query: 68  VPPVTVEVKENEPAPPSTKLSKVAE----LEHCIVYEDDHLLILNKPSGTAVHGGSGLHF 123
           +PP+ V+ KE +  P   +  + +     L   +++ED  +++LNKP+G AV GGSG++ 
Sbjct: 64  IPPLGVDPKEAKSGPIGGRDLRQSPDGELLSRMVLHEDAKVIVLNKPAGLAVQGGSGVNR 123

Query: 124 GAIEALRALRPQ-ARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALV 182
              + L A   Q      LVHR+DRDTSG+L+VA+ R A + L A FRE+  +K Y+ALV
Sbjct: 124 HIDKMLEAWTSQKGEKPRLVHRLDRDTSGVLVVARTRGAAQQLTAAFRERDTKKTYWALV 183

Query: 183 MGHWDAECKVVNAPLLKNEV--NSIVRVNPNGKPSE----TRFRILEKFAE-ATLVQASP 235
            G        ++  L+K        VR+  +G+       + +RI+E+  +    ++  P
Sbjct: 184 RGVPRKREDKISTWLVKEPTPDGDRVRIAKHGEDGADHAISYYRIVEQAGQNLAWLEMEP 243

Query: 236 VTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIE-RLFLHAANIQFVHPASEKK 294
            TGRTHQ+RVH  ++GHPI  D +Y +   + +T   G++ RL LHA +I   HP +  +
Sbjct: 244 YTGRTHQLRVHAAHIGHPIIGDPKYFEADVN-WTFPGGMQNRLHLHARHIDIPHP-NGGR 301

Query: 295 LEIHAPLEAHLEQA 308
           L+I APL  H+ Q+
Sbjct: 302 LKITAPLPQHMVQS 315