Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  126 bits (317), Expect = 6e-34
 Identities = 85/257 (33%), Positives = 138/257 (53%), Gaps = 16/257 (6%)

Query: 74  EVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALRAL 132
           +V E E        ++  E++  IVYEDDH+L++NK +G  VH G+G   G +  AL   
Sbjct: 63  QVIEIEATLEEEVAAEAQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALLHH 122

Query: 133 RPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAE 189
            P+   +    ++HR+D+DT+G+++VAK   A  HL A  + + + + Y A+V+G   A 
Sbjct: 123 CPEIEHVPRAGIIHRLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMTAG 182

Query: 190 CKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQ 248
              V+AP+ ++      + V+ +G+PS T +R+ EKF   T ++    TGRTHQIRVH  
Sbjct: 183 -GTVDAPIGRHPTKRTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHMA 241

Query: 249 YMGHPIAWDDRYGDRRFDAYTAQ---FGIERLF----LHAANIQFVHPASEKKLEIHAPL 301
           ++GH +  D  YG R      A    F + + F    LHA  ++  HP + + +  +AP+
Sbjct: 242 HIGHVLVGDPVYGGRPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSFNAPI 301

Query: 302 EAH---LEQALTKMRQA 315
                 L +AL K  +A
Sbjct: 302 PEDMVLLTKALRKDTEA 318