Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  122 bits (307), Expect = 6e-33
 Identities = 79/204 (38%), Positives = 111/204 (54%), Gaps = 8/204 (3%)

Query: 97  IVYEDDHLLILNKPSGTAVHGGSGLHF--GAIEALRALRPQARFLELVHRIDRDTSGILL 154
           I Y D  L+I+NKPSG   + G   H    AI  L  L P+A    LVHR+D  TSGI++
Sbjct: 16  IRYIDRDLIIINKPSGLLSNPGMAAHTHDSAITRLCRLYPEAI---LVHRLDCATSGIMV 72

Query: 155 VAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVRV--NPNG 212
            A+ + A  +L+ QF+ +  +K Y A V G  + +   ++ PL K+  N   +      G
Sbjct: 73  FARSKKAESNLKTQFQNRDTEKRYLAQVAGIIEQDEGTIDLPLGKDRSNPPWQKVDMAEG 132

Query: 213 KPSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYG-DRRFDAYTAQ 271
           +P+ T +R+L +   +TLV   P TGRTHQ+RVH   +GHPI  DD YG  + F   T +
Sbjct: 133 RPAVTHYRVLARRENSTLVALEPETGRTHQLRVHMLSLGHPILGDDFYGRTQEFGQGTVE 192

Query: 272 FGIERLFLHAANIQFVHPASEKKL 295
               RL LHA  + F HP S K +
Sbjct: 193 EASPRLCLHAERLSFKHPWSNKPM 216