Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  380 bits (976), Expect = e-110
 Identities = 192/314 (61%), Positives = 236/314 (75%), Gaps = 4/314 (1%)

Query: 4   IRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAG 63
           + TQVQ I IDED AGQRIDNFL  +LK +PKS++YRI+RKGEVRVNKKR+K EYKL AG
Sbjct: 16  VPTQVQLISIDEDGAGQRIDNFLLAKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLAAG 75

Query: 64  DVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHF 123
           D VRVPPV V  K+   AP S  L++VA+LE  I++ED  +++LNKP+G AVHGGSG+ +
Sbjct: 76  DEVRVPPVRVAEKDYRTAP-SANLNRVAQLEDRILFEDKQIIVLNKPAGIAVHGGSGVDY 134

Query: 124 GAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVM 183
           G IE+LR+LRP  +FLELVHR+DRDTSG+LL+AKKR ALRHL  Q R K +QK Y ALV 
Sbjct: 135 GVIESLRSLRPTCKFLELVHRLDRDTSGVLLIAKKRMALRHLHDQLRNKQMQKVYQALVR 194

Query: 184 GHWDAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRT 240
           G W    +VV APLLK  + S   IVRVN  GKPSETRFR+L +F EA+LV+ASPVTGRT
Sbjct: 195 GQWQEHDRVVKAPLLKITLKSGERIVRVNSEGKPSETRFRVLRRFDEASLVEASPVTGRT 254

Query: 241 HQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAP 300
           HQIRVH QY GHPIA DD+Y +++FD      G++RLFLHAA + F HP SE ++ + AP
Sbjct: 255 HQIRVHCQYQGHPIACDDKYSEQKFDDAMRAKGLQRLFLHAAQLTFTHPESETQMTVQAP 314

Query: 301 LEAHLEQALTKMRQ 314
           L+  L   L  + Q
Sbjct: 315 LDGDLTAVLDALEQ 328