Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella amazonensis SB2B

 Score =  120 bits (301), Expect = 3e-32
 Identities = 74/199 (37%), Positives = 116/199 (58%), Gaps = 13/199 (6%)

Query: 97  IVYEDDHLLILNKPSGT-AVHGGSGLHF-GAIEALRALRPQARFLELVHRIDRDTSGILL 154
           I+++D  ++++NKPSG  +V G   +H   A   ++A  P +   ++VHR+D  TSG+++
Sbjct: 17  ILHQDKDIIVINKPSGLLSVPGRDPIHHDSAWSRIKAEHPNS---QVVHRLDMATSGVMV 73

Query: 155 VAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVRVNPN--G 212
            A ++SA   L+ QFR++   K Y+A V GH  A C V + PL+ +  N   +   +  G
Sbjct: 74  YALRKSAEVELKRQFRDRETHKTYFARVAGHVKANCSV-DLPLICDWPNRPRQKVDHEIG 132

Query: 213 KPSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQF 272
           KPS T   ++     +TLV+ +P+TGR+HQ+RVH   +GHPI  D  Y D       A+ 
Sbjct: 133 KPSLTHVDVISYGKRSTLVKLTPITGRSHQLRVHMMALGHPILGDGFYADP-----LAKS 187

Query: 273 GIERLFLHAANIQFVHPAS 291
             +RL LHAA++ F HP S
Sbjct: 188 LADRLLLHAASLSFTHPYS 206