Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  161 bits (408), Expect = 2e-44
 Identities = 105/310 (33%), Positives = 163/310 (52%), Gaps = 10/310 (3%)

Query: 8   VQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR 67
           V+ + + +D  G R+D + + +   +    + ++LR G++RV+ KRVK+  +LEAG  VR
Sbjct: 3   VETVAVTQDEDGSRLDRWFKRRYPALTHGRLEKLLRTGQIRVDGKRVKSGERLEAGQQVR 62

Query: 68  VPPVTVEV----KENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHF 123
           VPP+  E           P      ++  L   I++ED HL+++NK +G AV GG+G   
Sbjct: 63  VPPLGDEAPSPSSSGHAVPRPAAEGEIRALRRAILHEDAHLIVINKEAGLAVQGGTGTPH 122

Query: 124 GAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVM 183
                L +L        LVHR+D+DTSG+L++A+ ++A R L + FR +   K Y+A+V+
Sbjct: 123 HLDGMLESLADGGETPRLVHRLDKDTSGVLVLARTQAAARALTSAFRSREALKVYWAIVV 182

Query: 184 GHWDAECKVVNAPLLKNEVNSIVRVNPN---GKPSETRFRILEKFAEA-TLVQASPVTGR 239
           G        +   L K       R+  N   GK + T FR++++ A+A   V+  P TGR
Sbjct: 183 GRPPMLQGTIKGALAKVAGGRGERMEINEEEGKRAVTDFRVVDQAAKACAWVELHPRTGR 242

Query: 240 THQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHA 299
           THQ+RVH   MG PI  D +YG         +   +R+ LHA  +   HPA    LEI A
Sbjct: 243 THQLRVHCLEMGTPILGDGKYGGPGAFLEGTELP-KRMHLHARALALPHPAG-GVLEIIA 300

Query: 300 PLEAHLEQAL 309
           P   H  ++L
Sbjct: 301 PPPPHFVESL 310