Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

 Score =  119 bits (298), Expect = 1e-31
 Identities = 87/310 (28%), Positives = 153/310 (49%), Gaps = 34/310 (10%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRV-KAEYKLEAGDVVRVPPV 71
           +D + AGQR+D +L   +  + ++ + +++ +  V VN + + +   +++ G  VRV   
Sbjct: 29  VDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRV--- 85

Query: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSG----------- 120
                  E  PP     +   +   +VYEDD L++++K +G  VH G G           
Sbjct: 86  -------EEPPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALL 138

Query: 121 LHFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYA 180
            H G   +L  +  + R   +VHR+D+DTSG+++ AK   A   L  QF   ++ + Y  
Sbjct: 139 AHCGP--SLSGIGGERR-PGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLC 195

Query: 181 LVMGHWDAECKVVNAPLLKNEVN--SIVRVNPNGKPSETRFRIL-EKFAEATLVQASPVT 237
           LV G        ++APL ++      +  V+  GK + T +R++ +    A++V+ +  T
Sbjct: 196 LVWGRPRPAAGSIDAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLST 255

Query: 238 GRTHQIRVHTQYMGHPIAWDDRYGDRRF------DAYTAQFGIERLFLHAANIQFVHPAS 291
           GRTHQ+RVH  ++GHP+  D  YG R        D       + R  LH+ ++ F+HP +
Sbjct: 256 GRTHQVRVHMAHIGHPLLGDAVYGHRNIPKKLPGDLSERIARLTRQALHSFHLGFLHPRT 315

Query: 292 EKKLEIHAPL 301
            + LE  + L
Sbjct: 316 GESLEFLSEL 325