Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 324 a.a., 23S rRNA pseudouridine(1911/1915/1917) synthase RluD from Rhodanobacter denitrificans MT42

 Score =  131 bits (330), Expect = 2e-35
 Identities = 99/311 (31%), Positives = 153/311 (49%), Gaps = 27/311 (8%)

Query: 18  AGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVTVEVK- 76
           AG+R D  L     +  +S +   ++ G V ++  +      L  G+      V +EV+ 
Sbjct: 15  AGRRFDQALAEMFPDYSRSRLSGWIKSGAVTLDGAQAPPRQLLRGGE-----RVCLEVEL 69

Query: 77  ENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI-EALRALRPQ 135
           ENE +      S   ++   IV+ED HLL+L+KP+G  VH G+G   G +  AL    PQ
Sbjct: 70  ENEVS------SAAEDIALTIVHEDAHLLVLDKPAGLVVHPGAGNPAGTLLNALLHHDPQ 123

Query: 136 ARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKV 192
              L    +VHR+D+DTSG+++VA+       L        V++ Y A+V+G   A    
Sbjct: 124 LAELPRAGIVHRLDKDTSGLMVVARTLPTYTALVDLLSRHEVERQYEAVVLGTLVAG-GT 182

Query: 193 VNAPL---LKNEVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQY 249
           V+AP+   + + +   VR   +GK + T +R+ E+F   +L+Q    TGRTHQIRVH  +
Sbjct: 183 VDAPIGRSMGDRLRQAVRDEEDGKRAVTHYRLRERFRAHSLLQCQLETGRTHQIRVHLAH 242

Query: 250 MGHPIAWDDRYG-------DRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLE 302
           +GHP+  D  YG           +      G  R  LHA  + F+HPAS + L   A   
Sbjct: 243 IGHPLIGDPLYGGGLKLPKGASAELAATLRGFRRQALHAEKLSFIHPASGEALSFGAQRP 302

Query: 303 AHLEQALTKMR 313
           A L+  +  +R
Sbjct: 303 ADLQALIEALR 313