Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 455 a.a., RluA family pseudouridine synthase from Rhodopseudomonas palustris CGA009

 Score =  161 bits (407), Expect = 3e-44
 Identities = 108/312 (34%), Positives = 170/312 (54%), Gaps = 12/312 (3%)

Query: 6   TQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDV 65
           T+V+ + +  D  G R+D FL  +   +  S + RI+RKGE+RVN KR  ++ +LE G  
Sbjct: 127 TKVETVTVTADENGMRVDRFLEARFPGLSFSHIQRIVRKGELRVNGKRADSKDRLEEGQS 186

Query: 66  VRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGA 125
           VR+PP+ ++  +        +   +  L+   ++ED  +L+LNKP+G AV GGSG     
Sbjct: 187 VRIPPLKLDTPKLPGHLSEAEQKTLQTLKAMTLFEDADVLVLNKPAGLAVQGGSGTTRHI 246

Query: 126 IEALRALR-PQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG 184
            + L  LR  + +   LVHRID++T+G LLVAK R A   L   FR ++ +K Y+ALV G
Sbjct: 247 DQMLEVLRDSKGQKPRLVHRIDKETAGCLLVAKTRFAATALTGSFRHRSARKIYWALVAG 306

Query: 185 HWDAECKVVNAPLLK--NEVNSIVRVNPNG----KPSETRFRILEKFAE-ATLVQASPVT 237
               +   ++  L K  +E +SI+RV  +G      + T + ++E   +    V   PVT
Sbjct: 307 VPKPKQGRISTYLAKDESEEDSIMRVAKHGDDGASHAVTYYAVVETSGQKLAWVSLKPVT 366

Query: 238 GRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIE-RLFLHAANIQFVHPASEKKLE 296
           GRTHQ+R H  ++GH I  D +Y +   + +    G++ RL L A  I   HP     ++
Sbjct: 367 GRTHQLRAHMAHIGHAIVGDPKYFN--IENWQLPGGLQNRLHLLARRIVIPHPRG-GVID 423

Query: 297 IHAPLEAHLEQA 308
           + APL  H+ Q+
Sbjct: 424 VSAPLPPHMLQS 435