Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 344 a.a., ribosomal large subunit pseudouridine synthase D from Phaeobacter inhibens DSM 17395

 Score =  117 bits (293), Expect = 4e-31
 Identities = 96/321 (29%), Positives = 150/321 (46%), Gaps = 62/321 (19%)

Query: 40  RILRKGEVRVNKKRVK-AEYKLEAGDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIV 98
           R++  G+++VN   V  A+ K++ G ++ +   T+E  E+    P        ++   ++
Sbjct: 39  RLIEAGQLQVNGTVVSDAKAKVDEGALIEI---TIEEAEDSHIGPE-------DIPLEVI 88

Query: 99  YEDDHLLILNKPSGTAVHGGSGLHFGAIEALRALRPQA----------RFLELVHRIDRD 148
           YEDD L+++NKP+G  VH   G   G +  + AL              +   +VHRID++
Sbjct: 89  YEDDDLIVINKPTGMVVHPAPGTPSGTL--VNALLHHCGDNLSGVGGVKRPGIVHRIDKE 146

Query: 149 TSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKN------EV 202
           TSG+L+VAK   A + L AQF + TV++YY A+  G  DA     N P L+       E 
Sbjct: 147 TSGLLVVAKSDVAHQGLAAQFEKHTVERYYRAICYGVPDA-----NDPRLRGVKGTSFEP 201

Query: 203 NSIVRVN-----------------PNGKPSETRFRILEKFAE---ATLVQASPVTGRTHQ 242
            +I+++                    G+ + TR RI++ F       L++    TGRTHQ
Sbjct: 202 GNILKLTTQLARHKTDRQRQAVLFQGGRHAITRARIVDSFGTPPVVALIECWLETGRTHQ 261

Query: 243 IRVHTQYMGHPIAWDDRYGDRR--------FDAYTAQFGIERLFLHAANIQFVHPASEKK 294
           IRVH  + GH +  D  YG +R         D   A     R  LHAA + F+HP +   
Sbjct: 262 IRVHMAHGGHGLVGDPVYGGKRKLAAKSLPEDTAAAIQAFPRQALHAAVLGFIHPVTGDA 321

Query: 295 LEIHAPLEAHLEQALTKMRQA 315
           +   APL   +   L K+  A
Sbjct: 322 MRFEAPLPEDMAHLLQKLGAA 342