Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 343 a.a., ribosomal large subunit pseudouridine synthase C from Phaeobacter inhibens DSM 17395

 Score =  189 bits (481), Expect = 6e-53
 Identities = 122/329 (37%), Positives = 183/329 (55%), Gaps = 38/329 (11%)

Query: 11  IDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPP 70
           I + ED A QRID +LR    ++ +  + ++ RKGE+R++  RVKA  ++ AG VVRVPP
Sbjct: 2   ITVSEDDADQRIDRWLRRLFPHVSQGRIEKMCRKGELRLDGGRVKANSRVAAGQVVRVPP 61

Query: 71  VTVEVKENEPA-PPSTKLSK--VAELEHCIVYEDDHLLILNKPSGTAVHGGSGL--HFGA 125
             +   + +PA  PS ++S+     +  C++Y+DD +++LNKP+G AV GGSG   H   
Sbjct: 62  --LGASDLKPAEAPSYRISEADAKMIRGCVIYKDDAVIVLNKPAGLAVQGGSGTTKHVDG 119

Query: 126 IEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG- 184
           + A      + +   LVHR+D+DTSG+L++A+ R A + L A FR +  +K Y+ALV G 
Sbjct: 120 LSAALQFDAEEK-PRLVHRLDKDTSGVLVLARTRLAAQSLTAAFRHRATRKIYWALVAGV 178

Query: 185 ----HWDAECKVVNAP-------------LLKNEVNSIVRVNPNGKPSETRFRILEKFA- 226
                 + +C +V AP             +  NEV+S     P  K S T +  L + A 
Sbjct: 179 PTPYLGEIKCGLVKAPGHGKSGEGEKMIAIHSNEVDS----TPGAKRSHTHYATLYRVAS 234

Query: 227 EATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYG----DRRFDAYTAQFG---IERLFL 279
            A  V   P+TGRTHQ+R H   +GHPIA D +YG    +   D + AQ G    ++L L
Sbjct: 235 RAAWVAMEPITGRTHQLRAHMAEIGHPIAGDGKYGGSSQENLGDGWGAQLGGIISKKLHL 294

Query: 280 HAANIQFVHPASEKKLEIHAPLEAHLEQA 308
           H   + F HP ++K L I APL  H++ +
Sbjct: 295 HCRRMAFEHPTTKKPLSITAPLPDHMKDS 323