Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 323 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  128 bits (322), Expect = 2e-34
 Identities = 92/305 (30%), Positives = 153/305 (50%), Gaps = 28/305 (9%)

Query: 12  DIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKK-RVKAEYKLEAGDVVRVPP 70
           +I     GQR+D  L     +  ++ +   ++ G V V+   + K   K+  G  + +  
Sbjct: 10  EITATQTGQRLDQTLAELFPDYSRTRIKEWIQAGAVYVDGMVQTKPREKVLEGQEIEIEA 69

Query: 71  VTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALR 130
              E  + E        ++  +L+  IVYEDDH++++NK +G  VH G+G   G +  + 
Sbjct: 70  TLKEEIKAE--------AQAIDLD--IVYEDDHIIVINKQAGLVVHPGAGNSDGTL--MN 117

Query: 131 ALRPQARFLELV------HRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG 184
           AL      +ELV      HR+D+DT+G+++VAK   A  HL A  + + + + Y A+V G
Sbjct: 118 ALLHHCPEIELVPRAGIVHRLDKDTTGLMVVAKTVEAQTHLVAALQAREITREYEAIVSG 177

Query: 185 HWDAECKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQI 243
              A   VV+ P+ ++      + V+ +G+PS T +R+ EKF   T ++    TGRTHQI
Sbjct: 178 TMTAG-GVVDEPIARHPTKRTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQI 236

Query: 244 RVHTQYMGHPIAWDDRYGDR-------RFDAYTAQFGIERLFLHAANIQFVHPASEKKLE 296
           RVH  ++GH +  D  YG R         +   A  G +R  LHA  ++  HP + + + 
Sbjct: 237 RVHMAHIGHILVGDPVYGGRPRPPKKATPELMEALNGFKRQALHAVRLELAHPFTCEIMS 296

Query: 297 IHAPL 301
             AP+
Sbjct: 297 WQAPI 301