Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., RluA family pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  380 bits (977), Expect = e-110
 Identities = 185/312 (59%), Positives = 243/312 (77%), Gaps = 4/312 (1%)

Query: 7   QVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVV 66
           +V+ + IDED  GQRIDNFL  +LK +PKS++YRI+RKGEVRVNKKR+K EYKL+ GD+V
Sbjct: 19  KVELVTIDEDNLGQRIDNFLVTKLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLQDGDIV 78

Query: 67  RVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI 126
           R+PPV V   E++P P S KL+KV++LE  I++ED  +++LNKP+G AVHGGSG+ FG I
Sbjct: 79  RIPPVRVSASEDKPGP-SAKLTKVSQLEGRILFEDKAIIVLNKPAGIAVHGGSGVDFGVI 137

Query: 127 EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW 186
           EA+R+LRPQ +FLELVHR+D++TSG+LL+AKKR AL+HL  Q R K +QK Y ALV G W
Sbjct: 138 EAMRSLRPQQKFLELVHRLDKETSGVLLIAKKRRALKHLHDQLRYKKMQKDYMALVRGEW 197

Query: 187 DAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQI 243
               KV+NAPLLK  + S   IVRVN  GKPSETRF+I++++  ATLVQASPVTGRTHQI
Sbjct: 198 QNHDKVINAPLLKLTLKSGERIVRVNQEGKPSETRFKIMQRYQGATLVQASPVTGRTHQI 257

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEA 303
           RVH QY GHPIA D++Y +++FD    + G+ RLFLHAA ++F HP SE+ +++ APL+ 
Sbjct: 258 RVHCQYAGHPIACDEKYSEQKFDDAMRELGLNRLFLHAAQLKFTHPVSEEVMQVKAPLDK 317

Query: 304 HLEQALTKMRQA 315
            L+  L K+ +A
Sbjct: 318 ALQDLLNKLDKA 329