Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 217 a.a., pseudouridine synthase (RefSeq) from Shewanella loihica PV-4

 Score =  126 bits (316), Expect = 5e-34
 Identities = 77/202 (38%), Positives = 113/202 (55%), Gaps = 11/202 (5%)

Query: 97  IVYEDDHLLILNKPSGTAVHGGSGL--HFGAIEALRALRPQARFLELVHRIDRDTSGILL 154
           I Y+D  ++I+NKPSG   + G     H  AI  L    P+A    LVHR+D  TSGI++
Sbjct: 16  IRYQDRDIIIINKPSGLLSNPGRAAETHDCAINRLLQRFPEAI---LVHRLDCATSGIMV 72

Query: 155 VAKKRSALRHLQAQFREKTVQKYYYALVMGHWDAEC-KVVNAPLLKNEVNSIVRVNPNGK 213
            A  + A  HL+ QF+ +T +KYY A V G    +  K+  A    +E   + ++  +GK
Sbjct: 73  FALNKKAESHLKTQFQNRTTEKYYVAEVEGLMAQDSGKIELAMKPDSEQPPLQKIAEDGK 132

Query: 214 PSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFG 273
           P+ T F +LE+ + +TLV+  P+TGRTHQ+R+H + +GH I  DD YGD    A      
Sbjct: 133 PATTYFEVLERRSNSTLVKLKPITGRTHQLRLHMKALGHTILGDDFYGDEAIIA-----A 187

Query: 274 IERLFLHAANIQFVHPASEKKL 295
             RL LHA ++   HP  + +L
Sbjct: 188 APRLHLHAEHLSITHPYKQTRL 209