Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 225 a.a., pseudouridylate synthase (RefSeq) from Shewanella loihica PV-4

 Score =  131 bits (330), Expect = 1e-35
 Identities = 79/208 (37%), Positives = 122/208 (58%), Gaps = 10/208 (4%)

Query: 97  IVYEDDHLLILNKPSGT-AVHGGSGLHFGAIEALRALRPQARFLELVHRIDRDTSGILLV 155
           I++ED  +L++NKPSG  +V G    ++ ++   R LR      ++VHR+D  TSGI++V
Sbjct: 16  ILHEDKDILVVNKPSGLLSVPGRDPAYYDSVYT-RVLRDHPN-AQIVHRLDMATSGIIVV 73

Query: 156 AKKRSALRHLQAQFREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSIVRV--NPNGK 213
           A +RSA R L+ QFR++   K YYA V GH  AE   V+ PL+ +  N   +   +  GK
Sbjct: 74  ALRRSAERELKRQFRDRETHKIYYARVAGHLKAEQGSVDYPLICDWPNRPKQKVDHQIGK 133

Query: 214 PSETRFRILEKFAEATLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFG 273
            S+T F ++ +   +TLV+ +P+TGR+HQ+RVH   +GHPI  D+ Y D       A+  
Sbjct: 134 ASKTLFEVISRAKRSTLVKLTPITGRSHQLRVHMMAIGHPILGDNFYADP-----LAKRL 188

Query: 274 IERLFLHAANIQFVHPASEKKLEIHAPL 301
             RL LHA ++   HP S++ +    P+
Sbjct: 189 APRLLLHAQSLSLTHPYSKQPMTFSTPI 216