Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 298 a.a., RluA family pseudouridine synthase from Methanococcus maripaludis JJ

 Score =  126 bits (316), Expect = 7e-34
 Identities = 81/316 (25%), Positives = 163/316 (51%), Gaps = 23/316 (7%)

Query: 3   EIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEA 62
           E + ++  + +D  + G ++ + L++  + +   ++ +  ++ ++ VN K +  + KL+ 
Sbjct: 2   ESQKKILKLTVDSKIVGNKLIDVLKDNFE-LSNKMIKKFDKENKIFVNSKNISLKSKLKE 60

Query: 63  GDVVRVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLH 122
            + V V    ++   N   P +  L+        I+YEDD LLI++KP    VH    + 
Sbjct: 61  NETVYVE---IDCGINTIDPENLALN--------IIYEDDDLLIVDKPKNMVVHPTKNVL 109

Query: 123 F----GAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYY 178
                 A+   + +  Q   +  V+R+D DT+G+L++AK   + + L  Q  E  ++K Y
Sbjct: 110 SKTLANAVSNHQKINNQNYKIRFVNRLDMDTTGLLIIAKDPYSHQRLAKQMDEGILEKIY 169

Query: 179 YALVMGHWDAECKVVNAPLLKNEVNSIVRVNPNGKPSETRFRILEKFAEATLVQASPVTG 238
            A+V GH D +  ++   +  N+      ++  GK S+T+++++E+   A++++   +TG
Sbjct: 170 IAVVNGHLDLKEGIIEDSIDLNDDGIKRELSNVGKISKTKYKVIEELKNASILEIKLLTG 229

Query: 239 RTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIH 298
           RTHQIRVH    G+ I  D  YG+           IER  LH+  ++F+HP +++K+E  
Sbjct: 230 RTHQIRVHLSSTGNYIIGDTLYGE-------ISNLIERQALHSYILRFIHPITKEKMEFS 282

Query: 299 APLEAHLEQALTKMRQ 314
           + L   +E  +  +++
Sbjct: 283 SKLPDDMENLIKNLKE 298