Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 325 a.a., pseudouridine synthase, RluA family from Marinobacter adhaerens HP15

 Score =  124 bits (312), Expect = 2e-33
 Identities = 95/326 (29%), Positives = 160/326 (49%), Gaps = 26/326 (7%)

Query: 2   NEIRTQVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLE 61
           +E R    F+ +  +++ +R+D      +    +S +   ++ G + VN +  K   K+ 
Sbjct: 3   SEKRILANFV-VPPELSDRRLDQAAAELMPEHSRSRLQSWIKSGALTVNGEVRKPRDKVM 61

Query: 62  AGDVVRVPPVTVEVKENEPAPPSTKLS-KVAELEHCIVYEDDHLLILNKPSGTAVHGGSG 120
             D + +            A P  ++S +  E+   IVYED+HLL++NKP+G  VH  +G
Sbjct: 62  LDDRLALD-----------AEPEAQVSWQAEEISLDIVYEDEHLLVINKPAGLVVHPAAG 110

Query: 121 LHFGA-IEALRALRPQARFLE---LVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQK 176
              G  + AL    P+   L    +VHR+D+DTSGI++VA+   A   L  Q + +T+ +
Sbjct: 111 HADGTLVNALLNYAPEVENLPRAGIVHRLDKDTSGIMVVARSLIAHTSLVDQLQTRTMGR 170

Query: 177 YYYALVMGHWDAECKVVNAPLLKN-EVNSIVRVNPNGKPSETRFRILEKFAEATLVQASP 235
            Y A+V+G        V+AP+ ++      + V  +GKP+ T +R++E+FA  T V+   
Sbjct: 171 EYEAVVVGTLTGGA-TVDAPIGRHPRERKKMAVVASGKPAVTHYRLVERFAAHTHVRCKL 229

Query: 236 VTGRTHQIRVHTQYMGHPIAWDDRYGDR-------RFDAYTAQFGIERLFLHAANIQFVH 288
            +GRTHQIRVH  ++ HP+  D  YG R         +   A     R  LHA  +   H
Sbjct: 230 ESGRTHQIRVHMAHVKHPLVGDPLYGGRLRLPKGTTDELREALSTFNRQALHARQLTLEH 289

Query: 289 PASEKKLEIHAPLEAHLEQALTKMRQ 314
           P + + L    PL   +   +  +R+
Sbjct: 290 PETGEILTWEVPLPEDMVALIEALRK 315