Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 541 a.a., ribosomal large subunit pseudouridine synthase D/dephospho-CoA kinase (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  120 bits (302), Expect = 6e-32
 Identities = 95/315 (30%), Positives = 145/315 (46%), Gaps = 38/315 (12%)

Query: 5   RTQVQFIDIDEDMAGQRIDNFLRNQLKN--IPKSVVYRILRKGEVRVNKKRVKAEYKLEA 62
           + Q   + +   M  +R+D FL   L +  + +  + R +R G+  V+            
Sbjct: 11  KEQAHSLTVPAGMRNERLDRFLGEALSHTDLSREKIKRAIRDGQCTVD------------ 58

Query: 63  GDVVRVPPVTVEVKENEP---APPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGS 119
           G V   P   +   +      AP +T +    E +  I++ D+HLL+++KP+G  VH   
Sbjct: 59  GTVCTTPSTRLRSGQRVELAIAPAATAVEP-EEGDLTIIHRDEHLLVIDKPAGLTVHPCP 117

Query: 120 GL-----------HFGAIEALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQ 168
                        HF A+ A    RP      +VHRID+DTSG+LLVA        L   
Sbjct: 118 SCPEGTLVHRLVHHFDALRAQEGFRPG-----IVHRIDKDTSGLLLVALSEGVRLKLSEA 172

Query: 169 FREKTVQKYYYALVMGHWDAECKVVNAPLLKNEVNSI-VRVNPNGKPSETRFRILEKFAE 227
           F E+TV+K Y ALV G   A  + V+AP+ ++  + + + V   GKP+ + +R+L    E
Sbjct: 173 FAERTVEKEYLALVHGVPPATGE-VDAPIGRHPTHKVRMAVVKGGKPARSEWRVLHAAPE 231

Query: 228 A--TLVQASPVTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQ 285
               LV     +GRTHQIRVH  + G P+  D  YG         Q    R  LHA ++ 
Sbjct: 232 GHYALVAVRIHSGRTHQIRVHMAHAGFPLWGDQLYGPGTPARLREQGYGARQMLHAWHLA 291

Query: 286 FVHPASEKKLEIHAP 300
           F HP + ++L    P
Sbjct: 292 FTHPVTGERLRFTCP 306