Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 357 a.a., ribosomal large subunit pseudouridine synthase D (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  146 bits (369), Expect = 6e-40
 Identities = 104/325 (32%), Positives = 165/325 (50%), Gaps = 34/325 (10%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVRVPPVT 72
           +D+  A  R+D +L  ++ N  ++ + +    G V  N K VK+ YK++  DV+ V    
Sbjct: 34  VDKGQAMVRVDKYLFERIVNASRNRIQKAAEDGFVMANGKPVKSSYKVKPLDVITVMMDR 93

Query: 73  VEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAIEALRAL 132
               ENE  P +  L+        IVYED +++++NKP+G  VH G G + G +    A 
Sbjct: 94  PRY-ENEIIPENIPLN--------IVYEDPYVMVVNKPAGLVVHPGHGNYHGTLVNALAW 144

Query: 133 RPQA--------RFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMG 184
             +           + LVHRID+DTSG+L++AK   A  +L  QF  KT ++ Y ALV G
Sbjct: 145 HMKDIPEYDANDPHVGLVHRIDKDTSGLLVIAKTPDAKTNLGIQFFNKTTKRRYRALVWG 204

Query: 185 HWDAECKVVNAPLLKN---EVNSIVRVNPN-GKPSETRFRILEKFAEATLVQASPVTGRT 240
           + + +   +   + +N    +   V  +P+ GK + T +R+LE+    TLV+    TGRT
Sbjct: 205 NVEQDEGTIVGSIARNPKDRMQMAVMSDPSMGKHAVTHYRVLERLGYVTLVECILETGRT 264

Query: 241 HQIRVHTQYMGHPIAWDDRYGDR------RFDAYTAQF------GIERLFLHAANIQFVH 288
           HQIRVH +++GH +  D+RYG         F  Y  QF         R  LHA  + FVH
Sbjct: 265 HQIRVHMKHIGHVLFNDERYGGHEILKGTHFSKY-KQFVNNCFDTCPRQALHAMTLGFVH 323

Query: 289 PASEKKLEIHAPLEAHLEQALTKMR 313
           P + +++   + L   + + + K R
Sbjct: 324 PVTGEEMYFTSELPDDMTRLIEKWR 348