Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 431 a.a., ribosomal large subunit pseudouridine synthase D from Burkholderia phytofirmans PsJN

 Score =  124 bits (312), Expect = 3e-33
 Identities = 91/313 (29%), Positives = 149/313 (47%), Gaps = 34/313 (10%)

Query: 13  IDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVVR-VPPV 71
           + +++AG+R+D  L        ++ +   +    VR++ K  K    +  G  +  VP +
Sbjct: 70  VPDELAGERLDKVLARVFPEFSRNRLQSWIEAERVRIDGKPAKIRQPVPLGATIELVPDL 129

Query: 72  TVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI----- 126
             E     P P   +          IVYEDD L+++NKP+G  VH  +G   G +     
Sbjct: 130 LPEQLAFTPEPVPLE----------IVYEDDTLVVINKPAGMVVHPAAGNWSGTVLNGLL 179

Query: 127 ----EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALV 182
               +A   L P+A    +VHR+D++TSG+++VA+   A   L  Q + +TV++ Y ALV
Sbjct: 180 YRYGDAAAGL-PRAG---IVHRLDKETSGLMVVARTLEAQTDLVRQLQARTVKRRYLALV 235

Query: 183 MGHWDAECKVVNAPL---LKNEVNSIVRVNPNGKPSETRFRILE----KFAEATLVQASP 235
            G+   E   ++AP+    +      V  + +GKP+ T FR ++    +    T +    
Sbjct: 236 WGNMPEE-GTIDAPIGRDPRERTRMAVVTSASGKPARTHFRRVDSAIWQRQPVTAIHCDL 294

Query: 236 VTGRTHQIRVHTQYMGHPIAWDDRYGDRRFDAYTAQF--GIERLFLHAANIQFVHPASEK 293
            TGRTHQIRVH  ++GHP+  D  YG  R          G  R  LHA  +  +HP + +
Sbjct: 295 ETGRTHQIRVHCAHIGHPLLGDPVYGRARGKRSVTPLPDGFARQALHAWRLGLIHPQTGR 354

Query: 294 KLEIHAPLEAHLE 306
            ++  A   A +E
Sbjct: 355 TMQWRADAPADME 367