Pairwise Alignments

Query, 315 a.a., 23S rRNA pseudouridine(955/2504/2580) synthase RluC from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., ribosomal large subunit pseudouridine synthase C (RefSeq) from Shewanella sp. ANA-3

 Score =  383 bits (983), Expect = e-111
 Identities = 190/312 (60%), Positives = 244/312 (78%), Gaps = 4/312 (1%)

Query: 7   QVQFIDIDEDMAGQRIDNFLRNQLKNIPKSVVYRILRKGEVRVNKKRVKAEYKLEAGDVV 66
           QVQ I IDED   QRIDNFL   LK +PKS++YRI+RKGEVRVNKKR+K EYKL+ GDVV
Sbjct: 19  QVQLITIDEDHLDQRIDNFLITVLKGVPKSMIYRIVRKGEVRVNKKRIKPEYKLQIGDVV 78

Query: 67  RVPPVTVEVKENEPAPPSTKLSKVAELEHCIVYEDDHLLILNKPSGTAVHGGSGLHFGAI 126
           RVPPV +  ++N  AP S  LS+V++LE  I++ED+HL++LNKP+G AVHGGSG+ +G I
Sbjct: 79  RVPPVRMAEQDNRTAP-SANLSRVSQLEDRILHEDNHLIVLNKPAGIAVHGGSGVDYGVI 137

Query: 127 EALRALRPQARFLELVHRIDRDTSGILLVAKKRSALRHLQAQFREKTVQKYYYALVMGHW 186
           EALR+LRPQ +FLELVHR+D+DTSG+LLVAKKRSAL+H+  Q R K +QK Y ALV G W
Sbjct: 138 EALRSLRPQQKFLELVHRLDKDTSGVLLVAKKRSALKHMHDQLRYKKMQKDYLALVKGEW 197

Query: 187 DAECKVVNAPLLKNEVNS---IVRVNPNGKPSETRFRILEKFAEATLVQASPVTGRTHQI 243
            A+ KVV  PLLK  + S   IVRVN  GKPSETRF+I++++   TLVQASPVTGRTHQI
Sbjct: 198 SAQDKVVKQPLLKLTLKSGERIVRVNAEGKPSETRFKIVQRYQGCTLVQASPVTGRTHQI 257

Query: 244 RVHTQYMGHPIAWDDRYGDRRFDAYTAQFGIERLFLHAANIQFVHPASEKKLEIHAPLEA 303
           RVH QYMGHPIA D++Y ++ FD      G+ RLFLHAA + F+HP +++ + + APL+ 
Sbjct: 258 RVHCQYMGHPIACDEKYSEQAFDDSMRALGLTRLFLHAAELMFIHPENDEVMRVSAPLDD 317

Query: 304 HLEQALTKMRQA 315
           +L+Q L+K+++A
Sbjct: 318 NLQQLLSKLKRA 329