Pairwise Alignments

Query, 174 a.a., 23S rRNA accumulation protein YceD from Vibrio cholerae E7946 ATCC 55056

Subject, 174 a.a., hypothetical protein (RefSeq) from Shewanella loihica PV-4

 Score =  141 bits (356), Expect = 5e-39
 Identities = 75/173 (43%), Positives = 104/173 (60%), Gaps = 1/173 (0%)

Query: 1   MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVV 60
           MQ VKIP ++DP +AA  +L ++GI+     KRL E  AG   D  VSL   +D Q +V 
Sbjct: 1   MQTVKIPVSIDPIRAAASKLSYEGIVPGVQLKRLNELCAGDCSDVAVSLECGVDIQGIVY 60

Query: 61  ISGKANIEVDLECQRCNEVFAHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLV 120
           + GKA  E+ L CQRC  +F  E  V+F ++P       ++ PD YD ++ NE GE+ L 
Sbjct: 61  LKGKAVTELTLICQRCMTLFTTEVTVDFCFSPCGSEAEIDELPDAYDPIECNEIGEIRLH 120

Query: 121 QLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLEEKPNPFDVLKSLK 173
           QL+EDE I+ +P + MH E  CS    ++V GE+ E   EE+PNPF VL+ LK
Sbjct: 121 QLIEDELIVAMPLIPMHAEESCSKGDQDVVVGEI-EPAQEERPNPFAVLEKLK 172