Pairwise Alignments

Query, 174 a.a., 23S rRNA accumulation protein YceD from Vibrio cholerae E7946 ATCC 55056

Subject, 174 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  148 bits (374), Expect = 4e-41
 Identities = 78/173 (45%), Positives = 107/173 (61%), Gaps = 1/173 (0%)

Query: 1   MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVV 60
           MQ VKIP ++DP +AA  R  ++GI+     KRL E  AG   D  VSL   +D Q +V 
Sbjct: 1   MQTVKIPVSIDPIRAASSRSTYEGIVPGQQLKRLNELCAGDCSDVAVSLECGVDLQGIVY 60

Query: 61  ISGKANIEVDLECQRCNEVFAHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLV 120
           + GKA  E+ L CQRC  +F  E  VEF + P   +   ++ PD YD ++ NE GEV L 
Sbjct: 61  LKGKAVTELTLVCQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH 120

Query: 121 QLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLEEKPNPFDVLKSLK 173
           QL+EDE I+ +P + MH+E DC++ S ++V GE+ E   EE+PNPF VL+ LK
Sbjct: 121 QLIEDELIVAMPIIPMHEETDCNIGSMDIVVGEI-EPAQEERPNPFAVLEKLK 172