Pairwise Alignments

Query, 174 a.a., 23S rRNA accumulation protein YceD from Vibrio cholerae E7946 ATCC 55056

Subject, 174 a.a., hypothetical protein (RefSeq) from Shewanella sp. ANA-3

 Score =  145 bits (365), Expect = 5e-40
 Identities = 76/173 (43%), Positives = 106/173 (61%), Gaps = 1/173 (0%)

Query: 1   MQKVKIPRTVDPAKAAQKRLDFDGIIQVNLFKRLEESVAGVKRDAEVSLSFEIDEQQLVV 60
           MQ VKIP ++DP +AA  R  ++GI+     +RL E  AG   D  VS+   +D Q +V 
Sbjct: 1   MQTVKIPVSIDPFRAASSRSTYEGIVPGQQLRRLNELCAGDCSDVAVSIECGVDLQGIVY 60

Query: 61  ISGKANIEVDLECQRCNEVFAHECEVEFTYTPYLGRKSEEDAPDEYDLVDLNEFGEVDLV 120
           + GKA  E+ L CQRC  +F  E  VEF + P   +   ++ PD YD ++ NE GEV L 
Sbjct: 61  LKGKAVTELTLVCQRCMTLFTTEVTVEFCFGPCRTKAEIDELPDAYDPIECNEIGEVRLH 120

Query: 121 QLVEDEFILNLPQVAMHDEADCSVDSDNLVFGELPEEVLEEKPNPFDVLKSLK 173
           QL+EDE I+ +P + MH+E DC+  S ++V GE+ E   EE+PNPF VL+ LK
Sbjct: 121 QLIEDELIVAMPIIPMHEETDCNTGSMDIVVGEI-EPAQEERPNPFAVLEKLK 172