Pairwise Alignments

Query, 255 a.a., YchF/TatD family DNA exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 258 a.a., Putative deoxyribonuclease YjjV from Pseudomonas fluorescens FW300-N2E2

 Score =  126 bits (316), Expect = 5e-34
 Identities = 74/257 (28%), Positives = 137/257 (53%), Gaps = 10/257 (3%)

Query: 3   VDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKMLAMIEPFSQVYAS 62
           +D+H HLD   + D  AD   +L ++    V  ++ +GV  D++ ++  +++    ++A+
Sbjct: 4   IDTHTHLD---FPDFDADRPALLAESRALGVRQMVVLGVYRDNWQRVWDLVQSDPDLHAA 60

Query: 63  CGVHP--LDVQSDFSLDLFHQY----AQHPRVVAIGETGLDYHYQPETADLQKLRFRQQI 116
            G+HP  LD      + L  ++    A H ++ A+GE GLDY+ +    + Q+  F  Q+
Sbjct: 61  LGLHPVYLDQHRPDDVALLREWLSRLAGHRQLCAVGEIGLDYYIETLDRERQQTLFEAQL 120

Query: 117 ETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGGVIHCFTEDLAFAQAAMELGFYISIS 176
           + A     P +IH R +    +  L+    ++ G +IH F   L  A+  ++LGF + + 
Sbjct: 121 QLAAEFELPALIHVRRSHAAVIATLKRFGLKRTG-IIHAFAGSLEEAREYIKLGFKLGLG 179

Query: 177 GIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAALKGV 236
           G  T+ QA  +  V+  LPLD +++ETDSP +AP    G+ N PA++  +   +A +  V
Sbjct: 180 GAATWPQALRMHRVLAKLPLDAVVLETDSPDMAPAMFPGQRNSPAHLPAICEALAQIMTV 239

Query: 237 SLTEVAQKTTQNFQNLF 253
              ++A+ +T N ++LF
Sbjct: 240 RPEQLAEASTTNARDLF 256