Pairwise Alignments

Query, 255 a.a., YchF/TatD family DNA exonuclease from Vibrio cholerae E7946 ATCC 55056

Subject, 262 a.a., Mg-dependent Dnase TatD from Caulobacter crescentus NA1000

 Score =  153 bits (386), Expect = 4e-42
 Identities = 90/263 (34%), Positives = 145/263 (55%), Gaps = 16/263 (6%)

Query: 1   MFVDSHCHLDKLDYQDLHADVSDVLDKAHQAKVEYLLSVGVTLDSFPKM--LAMIEPFSQ 58
           M +DSH +L    + +   D   V+ +A +A +  ++++   + SF  +  +AM EP   
Sbjct: 4   MLIDSHVNLHAPQFAE---DKDAVIARAREAGIAMMVTICDKVSSFEAVHAIAMAEP--D 58

Query: 59  VYASCGVHPLDVQSDFSLDL--FHQYAQHPRVVAIGETGLDYHYQPETADLQKLRFRQQI 116
           ++ + G HP + + +  L      + AQ PRVV IGE GLD+HY     ++Q   FRQ  
Sbjct: 59  IWCTVGTHPHEAKENPGLTAATLVELAQRPRVVGIGECGLDFHYDLSPREVQAEVFRQHC 118

Query: 117 ETAVALNKPLIIHTRNAQQDTLQLLREGKAQQCGG----VIHCFTEDLAFAQAAMELGFY 172
             A     PL++HTR A     ++L   +A+   G    ++HC+T     A  A  LG +
Sbjct: 119 VAARESGLPLVVHTREADAVMGEIL---EAEHAAGPFKILMHCYTSGAELAARAAALGAW 175

Query: 173 ISISGIVTFRQATDLKEVVKALPLDRLLIETDSPYLAPVPHRGKENQPAYVVEVAAYIAA 232
            S+SGI TF+ A +++ V++ +P DR+++ETD PYLAPVP RG+ N+PA++  +   +A 
Sbjct: 176 FSVSGIATFKAAEEVRAVIRDMPADRIIVETDCPYLAPVPMRGRRNEPAFLPHIYDKLAE 235

Query: 233 LKGVSLTEVAQKTTQNFQNLFLR 255
           ++G S  E  Q+T   F  LF R
Sbjct: 236 IRGWSRAETEQRTEDAFFALFDR 258