Pairwise Alignments

Query, 500 a.a., PTS glucose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 571 a.a., N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) from Pseudomonas fluorescens FW300-N2E3

 Score =  338 bits (866), Expect = 4e-97
 Identities = 195/472 (41%), Positives = 281/472 (59%), Gaps = 20/472 (4%)

Query: 25  MFKNAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPEVVSHLMEQAGGSVFGQMP 84
           M++     LQ++G+ALMLP+++LP+AG+LL +G  +   +      ++  AG  +F  + 
Sbjct: 1   MYQLFIEGLQRLGRALMLPIAILPIAGLLLRLGDTDLLNIA-----IIHDAGQVIFANLA 55

Query: 85  LLFAVGVALGFT-NNDGVSGLSAIVGYGIMVATLKVMATVMGVSGIDTGVLGGILAGGVA 143
           L+FA+G+A+GF  +N+G +GL+  +GY +MV+TLKV+      + I+ G+L GI++G +A
Sbjct: 56  LIFAIGIAVGFARDNNGTAGLAGAIGYLVMVSTLKVLD-----ASINMGMLAGIISGLMA 110

Query: 144 AWSFNRFYKIQLPEYLGFFAGKRAVPIITGFISIALGVVLSFIWPPIGSAIATFSDWAAN 203
              +NRF  I+LPEYL FF G+R VPI TGF ++ LGV+   IWPPI   I +F      
Sbjct: 111 GALYNRFKDIKLPEYLAFFGGRRFVPIATGFSAVGLGVIFGLIWPPIQHGINSFGQLLLE 170

Query: 204 QDPVTAFGIYGIVERSLIPFGLHHIWNVPFFYQAGTCVNGAGETVNGIMTCFLTADDASR 263
              + AF ++G+  R LI  GLHHI N   ++  G+  +    T   I+T  L    A  
Sbjct: 171 SGSIGAF-VFGVFNRLLIVTGLHHILNNMAWFIFGSFTD---PTTGAIVTGDLARYFAGD 226

Query: 264 AAGNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIE 323
             G  F  + G +   +FGLPAA  A+   A PE R  + GI  S ALTSFLTG+TEPIE
Sbjct: 227 PKGGQF--MTGMFPMMIFGLPAACLAMYRNALPERRKVMGGIFLSMALTSFLTGVTEPIE 284

Query: 324 FAFLFVAPVLYAIHAVLAGLAYVLTNALGVVHGHTFSNGFIDFVVQSPRADNMLLLVGLG 383
           FAF+F+AP+LY +H +L G+A  +TNAL +  G TFS G ID  +   ++ N  L+  +G
Sbjct: 285 FAFMFLAPLLYLLHVLLTGMAMAITNALNIHLGFTFSGGAIDMALGWGKSTNGWLVFPVG 344

Query: 384 IGYAVLYYVVFTFVIRALNLKTPGRED-ESADKSASSGNELAGDLVAAFGGKANITNLDA 442
           + YAV+YYVVF F IR  NLKTPGRE     +K   S N+ AG  + A GG  N+  + A
Sbjct: 345 LAYAVIYYVVFDFCIRRFNLKTPGREGVVVGEKVVLSENQRAGAYIQALGGAENLITVGA 404

Query: 443 CITRLRVSVADTALVDQDKLKKLGAAGVVM--VSGGVQAIFGTKSDNLKTEM 492
           C TRLR+ + D       +LK LGA  VV     G +Q + G  +D++  E+
Sbjct: 405 CTTRLRLEMVDRNKASDSELKALGAMAVVRPGKGGSLQVVVGPLADSIADEI 456



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 2/85 (2%)

Query: 411 ESADKSASSGNELAGDLVAAFGGKANITNLDA-CITRLRVSVADTALVDQDKLKKLGAAG 469
           E A K+A      A   + A GG  N+  LD   +TR+R+ +AD   + + +LK LG  G
Sbjct: 475 EEAPKAAPVETPEAQKWLNAVGGSDNVLQLDCVAMTRIRLQLADGKALSECQLKDLGCQG 534

Query: 470 VVMVSGGV-QAIFGTKSDNLKTEMD 493
           V  + GGV   + G K+ +L   ++
Sbjct: 535 VSALDGGVWHLLIGDKALSLSEALE 559