Pairwise Alignments

Query, 500 a.a., PTS glucose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 584 a.a., PTS system, N-acetylglucosamine-specific IIBC component from Caulobacter crescentus NA1000

 Score =  313 bits (803), Expect = 8e-90
 Identities = 197/503 (39%), Positives = 280/503 (55%), Gaps = 64/503 (12%)

Query: 33  LQKVGKALMLPVSVLPVAGILLGVGAANFSWLPEV----------VSHLMEQAGGSVFGQ 82
           LQ +G+ALMLP++VLPVA +LL +G  +    P +          V++    AGG++F  
Sbjct: 8   LQPLGRALMLPIAVLPVAALLLRIGQPDLLGAPALAAATHGMSLSVANTFGAAGGAIFAS 67

Query: 83  MPLLFAVGVALGFTN-NDGVSGLSAIVGY--------GIMVATLKVMATVM--------- 124
           + L+FA+GVA+G    N G +GL+ +V Y         ++VA  +V A  +         
Sbjct: 68  LGLIFAIGVAVGLARENHGAAGLAGVVCYVIATKGVEALLVAPPEVAAKAVEGAKDLAIA 127

Query: 125 -------GVSGIDTGVLGGILAGGVAAWSFNRFYKIQLPEYLGFFAGKRAVPIITGFISI 177
                  G   I  G+L G+++G +    +NR+  IQLPEYL FF G+R VPI+ G   +
Sbjct: 128 AWKAKEIGKLSIPVGILSGVISGAL----YNRYSTIQLPEYLAFFGGRRFVPIVAGLAGV 183

Query: 178 ALGVVLSFIWPPIGSAIATFSDWAANQDPVTAFG-----IYGIVERSLIPFGLHHIWNVP 232
            L ++    W  + + +   S        VTA G     +YG++ R LI  GLHHI N  
Sbjct: 184 VLALLFGAFWSTLEAGVDGLSGL------VTASGDLGLVVYGLLNRLLIVTGLHHILNNV 237

Query: 233 FFYQAGTCVNGAGETVNGIMTCFLTADDASRAAGNGFGQLAGGYLFKMFGLPAAAFAIAH 292
            ++  G   NG    V G +  F   D  + A  +GF      +   MFGLPAA  A+ H
Sbjct: 238 VWFILGD-FNG----VTGDLNRFAAGDKTAGAFMSGF------FPVMMFGLPAACLAMLH 286

Query: 293 CAKPENRAKVMGIMASAALTSFLTGITEPIEFAFLFVAPVLYAIHAVLAGLAYVLTNALG 352
            A+PE R  V G++ S ALTSFLTG+TEPIEF F+F+APVL+AIHA+L GL+  L N L 
Sbjct: 287 TARPERRKAVAGMLGSLALTSFLTGVTEPIEFTFMFLAPVLFAIHALLTGLSMALMNMLD 346

Query: 353 VVHGHTFSNGFIDFVVQSPRADNMLLLVGLGIGYAVLYYVVFTFVIRALNLKTPGREDES 412
           V  G  FS G  D+V+   +A   LLL+ +G+ Y  LYY VF F I   +LKTPGREDE+
Sbjct: 347 VKLGFGFSAGLFDYVLNFNKATRPLLLIPVGLVYGALYYGVFRFAILRFDLKTPGREDEA 406

Query: 413 --ADKSASSGNELAGDLVAAFGGKANITNLDACITRLRVSVADTALVDQDKLKKLGAAGV 470
             + ++ ++G     D++AA GG AN+ ++DAC TRLR+ V D  LV++  LK LGA GV
Sbjct: 407 PPSAQAVTTGGGRGADMLAALGGAANLVSVDACTTRLRLIVVDQGLVNEPALKALGARGV 466

Query: 471 VMVSG-GVQAIFGTKSDNLKTEM 492
           V  S   +Q + G  +D +  E+
Sbjct: 467 VRPSDKALQVVLGPIADTVAGEI 489



 Score = 35.8 bits (81), Expect = 4e-06
 Identities = 23/61 (37%), Positives = 30/61 (49%)

Query: 413 ADKSASSGNELAGDLVAAFGGKANITNLDACITRLRVSVADTALVDQDKLKKLGAAGVVM 472
           A   A   ++ A  L+AA GG  N+ +L    +RLRV + D   VDQ  L   G  G V 
Sbjct: 500 APAPAPDVSQAAKALLAALGGADNLRDLSVHASRLRVVLNDPQRVDQAALHTAGVRGFVR 559

Query: 473 V 473
           V
Sbjct: 560 V 560