Pairwise Alignments

Query, 500 a.a., PTS glucose transporter subunit IIBC from Vibrio cholerae E7946 ATCC 55056

Subject, 591 a.a., N-acetylglucosamine-specific PTS system, IIBC components (nagE) (from data) from Burkholderia phytofirmans PsJN

 Score =  349 bits (895), Expect = e-100
 Identities = 205/489 (41%), Positives = 295/489 (60%), Gaps = 34/489 (6%)

Query: 28  NAFANLQKVGKALMLPVSVLPVAGILLGVGAANFSWLPEVVS-HLMEQAGGSVFGQMPLL 86
           N F  +Q++G+ALMLP++VLPVAG+LL +G       P+V +  ++  AGG++F  +PLL
Sbjct: 4   NPFLKIQRLGRALMLPIAVLPVAGLLLRLGQ------PDVFNIKMIADAGGAIFDNLPLL 57

Query: 87  FAVGVALGFT-NNDGVSGLSAIVGYGIMVATLKVMATVMGVSGIDTGVLGGILAGGVAAW 145
           FA+GVA+GF  +N+GV+GL+  +GY I VA +K +   + +     GVL GI+AG VA  
Sbjct: 58  FAIGVAVGFAKDNNGVAGLAGAIGYLIEVAVMKDINDKLNM-----GVLSGIVAGIVAGL 112

Query: 146 SFNRFYKIQLPEYLGFFAGKRAVPIITGFISIALGVVLSFIWPPIGSAIATFSDWAANQD 205
            +NR+  I+LP+YL FF GKR VPI+TG + + LG+   ++W P+ + I T   W     
Sbjct: 113 LYNRYKDIKLPDYLAFFGGKRFVPIVTGVVCLVLGIAFGYVWQPVQAVIDTAGHWLTTAG 172

Query: 206 PVTAFGIYGIVERSLIPFGLHHIWNVPFFYQAGTCVNGAGETVNGIMTCFLTADDASRAA 265
            + AF ++G++ R L+  GLHHI N   ++  GT     G  V G +  F   D  +   
Sbjct: 173 ALGAF-VFGVLNRLLLVTGLHHILNSLTWFVFGTFTPPGGAAVTGDLHRFFAGDPTAGTF 231

Query: 266 GNGFGQLAGGYLFKMFGLPAAAFAIAHCAKPENRAKVMGIMASAALTSFLTGITEPIEFA 325
             GF      +   MFGLPAA  A+ H A  E RA V G++ S ALTSFLTG+TEPIEF+
Sbjct: 232 MTGF------FPVMMFGLPAACLAMFHEAPKERRAVVGGLLFSMALTSFLTGVTEPIEFS 285

Query: 326 FLFVAPVLYAIHAVLAGLAYVLTNALGVVHGHTFSNGFIDFVVQSPRADNMLLLVGLGIG 385
           F+F+APVLY IHA+L G++  + +ALG+  G TFS G ID+V+    +      + +G+ 
Sbjct: 286 FMFLAPVLYVIHALLTGISLAICSALGIHLGFTFSAGAIDYVLNYGLSTRGWWAIPIGLV 345

Query: 386 YAVLYYVVFTFVIRALNLKTPGRE----DESADKSASSG--NELAGDLV-------AAFG 432
           Y V+YY +F F IR  N+ TPGRE    DE  D  A+ G  + +AG  V       AA G
Sbjct: 346 YMVVYYGLFRFFIRKFNMATPGREPAAADEQVDSFAAGGFVSPVAGTAVPRAQRYIAALG 405

Query: 433 GKANITNLDACITRLRVSVADTALVDQDKLKKLGAAGVV-MVSGGVQAIFGTKSDNLKTE 491
           G +N++ +DAC TRLR+SV D+  V +++LK +GA GV+   S  VQ I G ++D +  E
Sbjct: 406 GASNLSVVDACTTRLRLSVVDSNKVSENELKTIGARGVLKRGSTNVQVIIGPEADIIADE 465

Query: 492 MDEWIRNNG 500
           +   I   G
Sbjct: 466 IRTVIAQGG 474



 Score = 36.6 bits (83), Expect = 3e-06
 Identities = 19/44 (43%), Positives = 27/44 (61%), Gaps = 1/44 (2%)

Query: 428 VAAFGGKANITNLDA-CITRLRVSVADTALVDQDKLKKLGAAGV 470
           +A FGG  N+ +LDA   TRLR+ V D + VD+ +L  L  A +
Sbjct: 513 LAVFGGAGNVLSLDAIAATRLRIVVRDPSAVDRQRLATLDTAWI 556