Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 469 a.a., Na+-dependent transporters of the SNF family from Pseudomonas stutzeri RCH2

 Score =  204 bits (520), Expect = 4e-57
 Identities = 141/461 (30%), Positives = 234/461 (50%), Gaps = 45/461 (9%)

Query: 3   REQWGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFS 62
           R  W SR  F LAA GSA+GLGNIW+FPY+  +NGGGAF + YL  ++  GIP ++ E  
Sbjct: 25  RGLWSSRWVFFLAATGSAVGLGNIWKFPYVTGQNGGGAFVLVYLACILLIGIPLLMTEVM 84

Query: 63  MGQKHRGSAPTTLAKI------HSKFEWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFT 116
           +G++ R +    +A++       S++  +GW       +I  +Y+ V GWA++Y   +F+
Sbjct: 85  IGRRGRANPDGAVARLAREAGASSRWRVVGWLGGLTGFLILSFYLVVAGWALAYVPATFS 144

Query: 117 QSWGSDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAA--IVG-GVKKGIE 173
             +   +           G+ S    G++       ++ A ++  A   IVG GV+ G+E
Sbjct: 145 GGFAGVS-----------GEASGELFGALLADPLRLVVCATLVLAATMLIVGFGVRGGLE 193

Query: 174 RASKIMMPILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLS 233
           R+ + +MP LF+++L+L+            + ++F PDFS +    V   A G  FFTLS
Sbjct: 194 RSLRFLMPGLFVLMLVLVVYAAIEGEFAQALQFLFVPDFSALTAQSV-LIALGHAFFTLS 252

Query: 234 IGFAIMLAYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVV 293
           +G   M+ Y SYLPE + I   + +  L +   ++LAG+ IF ++     E G       
Sbjct: 253 LGCGAMMVYGSYLPEGTSIAKTSILVALADTAVALLAGLAIFPLVFGNGLEPG------- 305

Query: 294 SAGVGLAFVTLPAAINLLPIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRK 353
            AG GL FVTLP A   +P+  ++G LFF+ LV+A L+S IS+ E   + L ++   SR 
Sbjct: 306 -AGPGLIFVTLPIAFGQMPLGQVVGGLFFIMLVIAALTSAISLSEPSIAWLTERFRISRT 364

Query: 354 KAANIVIGIGFL-----VSMAFATNG-------GLLLLDLVDHFANNVGIMASCLVELVL 401
           KA   V+G G +     +   F+ N        G    D +D+   N  +    L  ++ 
Sbjct: 365 KA---VLGSGLVLWLLSLGSVFSFNHWADYQLFGKTFFDTLDYLTTNWLMPLGGLGTVLF 421

Query: 402 MTWLLKISDVRKYVNSISDFSVGVWFDICLRFVSPVILAII 442
             W+L+   V + +   +      W+++ LR+ +PV + ++
Sbjct: 422 TGWVLQRQVVSEAIGIRNAGLFQAWWNL-LRYGTPVAIVLV 461