Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., Sodium:neurotransmitter symporter from Pseudomonas syringae pv. syringae B728a

 Score =  177 bits (448), Expect = 9e-49
 Identities = 135/479 (28%), Positives = 233/479 (48%), Gaps = 62/479 (12%)

Query: 6   WGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFSMGQ 65
           W SR  F+LAA GSA+GLG+IW+FPYM    GGGAF + +L  +   GIP MI E  +G+
Sbjct: 23  WASRWVFILAATGSAVGLGSIWKFPYMVGAYGGGAFVLVFLACIALIGIPVMIAETLIGR 82

Query: 66  KHRGSAPTTLAKI-----HS-KFEWLGWFQVGIAAVIAVYYVAVIGWAISY---FGMSFT 116
           + R S    L  +     HS ++ W  +  +  A +I  +Y  V GW++ Y    G    
Sbjct: 83  RSRLSPANALKTLAQEAGHSPRWSWGAFAGMITALLILSFYSVVGGWSLDYIIDMGRGDF 142

Query: 117 QSWGSDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERAS 176
           Q    D    +F   +      P  L  I WH  F +L A VI       GV+ G+E++ 
Sbjct: 143 QGVSPDQVGAYFGAVIA----DPWRL--ILWHTIFMLLSAVVIG-----KGVEAGLEKSL 191

Query: 177 KIMMPILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGF 236
           +IMMP+LF+++L L+   +     ++GV++MF  +  K+ D  +   A G  FF+LS+G 
Sbjct: 192 RIMMPMLFLLMLALLGYSLTTGHFMEGVHFMFDFNPEKVLDGLL--PAMGHAFFSLSVGV 249

Query: 237 AIMLAYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVVSAG 296
             ++ Y +Y+ + + I++      +++   S+LAG+ +F ++               S G
Sbjct: 250 GSIMVYGAYMTKGASISSTVVGIAMLDTFVSLLAGLALFPIVFAAGLNP--------SEG 301

Query: 297 VGLAFVTLPAAINLLPIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRKKAA 356
            GL FVTLP A   +    ++G +FF+ + VA  SS IS++E + + L+++   +R + A
Sbjct: 302 PGLMFVTLPYAFGNVAFGQLMGIVFFVLVAVAAWSSAISLLEPMVAYLVER---TRIRRA 358

Query: 357 NIV---------IGIGFLVSM-------AFATNG------------GLLLLDLVDHFANN 388
            +          +G+G + S         F  +G            GL    ++D F + 
Sbjct: 359 WVTFWLAFTCWFVGLGTVFSFNIWQKAKFFVNDGGAFHLYHWGASTGLDFFGVIDFFTSR 418

Query: 389 VGIMASCLVELVLMTWLLKISDVRKYVNSISDFSVGVWFDICLRFVSPVILAIIVATKL 447
           + +    L  +V   W++    VR  ++  S     + +   +R+V+P+ + ++ A +L
Sbjct: 419 IMLPLGGLCFVVFAGWVMSRETVRDELSIRSPLLFNLTY-FLMRYVAPLGILVVFAAQL 476