Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

 Score =  686 bits (1769), Expect = 0.0
 Identities = 332/494 (67%), Positives = 408/494 (82%), Gaps = 8/494 (1%)

Query: 1   MKREQWGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILE 60
           MKREQW SRVGF+LAAVGSAIGLGNIWRFPYMAY+NGGGAFFIPYLFAM+TAGIPFMI+E
Sbjct: 1   MKREQWNSRVGFILAAVGSAIGLGNIWRFPYMAYDNGGGAFFIPYLFAMITAGIPFMIME 60

Query: 61  FSMGQKHRGSAPTTLAKI-HS---KFEWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFT 116
           FS+G K + ++P   A++ H+   + EWLGWFQV IAAVIAVYYVA+IGW +SY G SF+
Sbjct: 61  FSLGHKIKKTSPRIFAQLGHTLGFRLEWLGWFQVFIAAVIAVYYVAIIGWTLSYLGFSFS 120

Query: 117 QSWGSDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERAS 176
           Q+WG + N +FF+ YLKLG+NSP++LG  Q  IA AM IAW++T+ A+  GVK GIERA+
Sbjct: 121 QAWGDNPNDFFFNHYLKLGNNSPSHLGEFQIGIAIAMSIAWLMTFMAVFTGVKGGIERAN 180

Query: 177 KIMMPILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGF 236
           KIMMP+LFIMVL+LI R++FLPGAL G+NY+F+PDFS++ D +VW+AAYGQIFFTLS+GF
Sbjct: 181 KIMMPMLFIMVLVLIGRIMFLPGALSGLNYLFEPDFSRLLDAQVWSAAYGQIFFTLSVGF 240

Query: 237 AIMLAYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVVSAG 296
           AIMLAYSSYLP K+DI NNAFMTVLINCGFS+LAGI+IF VLGYMA+EQ KPLTEVVS+G
Sbjct: 241 AIMLAYSSYLPTKADINNNAFMTVLINCGFSILAGILIFGVLGYMAEEQMKPLTEVVSSG 300

Query: 297 VGLAFVTLPAAINLLPIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRKKAA 356
           +GLAFVT+P AINL+P PYILGPLFF+ALV+AGLSSHISI+EAVTSA+IDK    RK AA
Sbjct: 301 IGLAFVTIPTAINLMPAPYILGPLFFIALVIAGLSSHISIIEAVTSAVIDKFHVRRKPAA 360

Query: 357 NIVIGIGFLVSMAFATNGGLLLLDLVDHFANNVGIMASCLVELVLMTWLLKISDVRKYVN 416
            +V  +G+LVSMAFATNGGLLLLDLVD+F NN+ ++ SCL+ELV++TWLLK++ + ++ N
Sbjct: 361 VLVCSLGYLVSMAFATNGGLLLLDLVDYFINNIALLLSCLLELVIITWLLKVTVIHQHAN 420

Query: 417 SISDFSVGVWFDICLRFVSPVILAIIVATKLQALFTEGYGGY----DLTLGWAIIAALLV 472
             S+F VG WF +CLRF+SP ILA I+A  L      GYG Y     L LGW ++  +L 
Sbjct: 421 ENSEFRVGGWFVVCLRFISPAILATILAKNLYNTLVNGYGDYPIADQLFLGWGLVGTMLF 480

Query: 473 IGILINASSRKEAY 486
             +LIN +S+   Y
Sbjct: 481 FAVLINFTSKSPGY 494