Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 452 a.a., sodium:neurotransmitter symporter (RefSeq) from Shewanella loihica PV-4

 Score =  177 bits (449), Expect = 7e-49
 Identities = 108/367 (29%), Positives = 191/367 (52%), Gaps = 25/367 (6%)

Query: 6   WGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFSMGQ 65
           + SR+GF++AA GSA+G+GNIW FP  A  +GGGAF + YL  +   G P ++ E  +G+
Sbjct: 9   FSSRIGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLIFLLGYPMLVAELMIGR 68

Query: 66  KHRGSAPTTLAKIHSKF------EWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFTQSW 119
             + +    +AK+ S        + +G+  +  A +I  +Y  + GW +S+      +  
Sbjct: 69  HGQTNPADAMAKLGSSKLSRNLGKTIGFASIITATLICTFYSILSGWFVSFTLAPIARLV 128

Query: 120 GSDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERASKIM 179
           G    A + + +            S++ ++ F ++   ++    I  GV++GIE  SK +
Sbjct: 129 GMQDIALWLTSF------------SLERNLLFTLIFILMVVLV-IRQGVQQGIEAWSKRL 175

Query: 180 MPILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGFAIM 239
           MP+L  ++++ +A ++  PGA  G+N +  PDF +IW+ +V   A GQ FF+L++G   M
Sbjct: 176 MPLLLAILILGVAYILTQPGASQGLNALLVPDFGRIWEPQVLIGALGQTFFSLTVGTGAM 235

Query: 240 LAYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVVSAGVG- 298
           + Y +YL  + ++        L +   + LA +MI   + Y+AQ  G  +     + +  
Sbjct: 236 MVYGAYLNRQENLAKLTAYVTLTDTSVAFLAALMIIPAM-YVAQHNGVQIFAADGSLLNA 294

Query: 299 --LAFVTLPAAINLLP--IPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRKK 354
             L F  LPA  + L      ++  +FF+ + +AGL+S ISI+E  TS +++K    R  
Sbjct: 295 DTLVFTVLPALFDSLGGLAGQLIAIVFFILMTIAGLTSAISIVEVPTSYMVEKTEIQRHS 354

Query: 355 AANIVIG 361
           A  +V G
Sbjct: 355 ATYLVGG 361