Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 503 a.a., sodium-dependent transporter from Methanococcus maripaludis S2

 Score =  440 bits (1132), Expect = e-128
 Identities = 217/475 (45%), Positives = 305/475 (64%), Gaps = 7/475 (1%)

Query: 1   MKREQWGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILE 60
           M REQW S++GF+LAAVGSA+GLGNIWRFPYMAYENGGGAF IPY  A++  GI  M+LE
Sbjct: 1   MAREQWASKMGFILAAVGSAVGLGNIWRFPYMAYENGGGAFLIPYFVALLFVGIMVMVLE 60

Query: 61  FSMGQKHRGSAPTTLAKIHSKFEWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFTQSWG 120
            ++G   +GSAP  L ++   FEW+GW  +  A +I  YY A+I WA+ Y    F   + 
Sbjct: 61  LALGHSTKGSAPLALRRLGKNFEWIGWLAIATAFIITTYYTAIIAWALVYLVKLFMVGFP 120

Query: 121 SDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERASKIMM 180
           +D   +FFS+ L L      +LG     I   + + W + Y  +  GV+KG+E+A++I+M
Sbjct: 121 TDFGGFFFSDILALSSGHG-DLGGFNLPILVGLALIWGVNYIVVNSGVRKGLEKANEILM 179

Query: 181 PILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML 240
           P+LF ++L L+ R I LPG L G+ Y   P+F+ +   KVW  A+ QIFFTLS+GF IM+
Sbjct: 180 PVLFFLILALVVRSITLPGGLMGIEYYLTPNFAVLLTPKVWIDAFSQIFFTLSLGFGIMV 239

Query: 241 AYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLA 300
           AYSSYLP+KSD+T +AF   L+NCGFS LAG  +F  LGYMA  QG P++EVV+  +GLA
Sbjct: 240 AYSSYLPKKSDLTASAFTISLMNCGFSFLAGFAVFGTLGYMAMTQGVPISEVVTQSIGLA 299

Query: 301 FVTLPAAINLLPIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRKKAANIVI 360
           FV  P A++L+P   IL  +FF+AL VAG+SS +S++E+  SA+IDK    R KAA+ VI
Sbjct: 300 FVAFPQALSLMPGGIILAAIFFIALFVAGISSSVSLVESTASAVIDKFNLPRHKAASAVI 359

Query: 361 GIGFLVSMAFATNGGLLLLDLVDHFANNVGIMASCLVELVLMTWLLKISDVRKYVNSISD 420
              F  S+ +ATN GL  LD VDH+ N   I    ++E+++  W+ K S + KY++++S+
Sbjct: 360 ATSFFASLIYATNAGLYWLDSVDHYINWFTIPLVAVLEIIVSIWIFKGSKLEKYIDNLSE 419

Query: 421 FSVGVWFDICLRFVSPVILAIIVATKLQALFTEGYGGYDLTLGWAIIAALLVIGI 475
           +++G ++       SP+ L  ++        T GY GY      A I  LL +GI
Sbjct: 420 YNLGSFWKFFAGIFSPLFLIYMILNGAWTELTLGYEGY------APIFLLLSLGI 468