Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., sodium-dependent transporter, putative (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  189 bits (479), Expect = 2e-52
 Identities = 130/463 (28%), Positives = 236/463 (50%), Gaps = 43/463 (9%)

Query: 6   WGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFSMGQ 65
           + SR+GF++AA GSA+G+GNIW FP  A  +GGGAF + YL  +   GIP ++ E  +G+
Sbjct: 12  FSSRLGFIMAAAGSAVGVGNIWGFPTQAATHGGGAFLLVYLVLIFILGIPMLMAELMIGR 71

Query: 66  KHRGSAPTTLAKI------HSKFEWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFTQSW 119
             + +    + K+       S  + +G   +  A +I  +Y  + GW +S+       ++
Sbjct: 72  HGQTNPADAMGKLGCNSLTRSLGKTIGLISIVTAGLIYTFYSILSGWFVSFAIAPIATAF 131

Query: 120 GSDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERASKIM 179
           GS+  A +  ++            S+  ++ F ++ + ++ +  ++ GV++GIE+ SK +
Sbjct: 132 GSNDTAAWLMDF------------SLSRNLVFTLIFSTLV-FLVLLQGVQEGIEKWSKRL 178

Query: 180 MPILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGFAIM 239
           MP+L IM++  +A +  L GA +G++ +  P+F+K         A GQ FF+L+IG   M
Sbjct: 179 MPLLLIMLIAGVAYIFSLNGASEGISALLTPNFAKAIAPDTLINALGQTFFSLTIGTGAM 238

Query: 240 LAYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQG----KPLTEVVSA 295
           + Y SYL +K +I          + G + LA  +I   + Y+AQ  G     P  +++ +
Sbjct: 239 MVYGSYLSQKENIAKLTVWVAFTDSGIAFLAAFLIIPAM-YVAQHNGVQIFSPEGKLIDS 297

Query: 296 GVGLAFVTLPAAINLL--PIPYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRK 353
              L F  LPA  + L      I+  +FF+ L++AGL+S ISI E  TS ++ K G+SR+
Sbjct: 298 D-ALVFTVLPALFSTLGDTANLIISVVFFMLLIIAGLTSAISIAEVPTSYVMQKCGFSRQ 356

Query: 354 KAANIV----IGIGFLVSMAFATNGGLLLLDLVDHFANNVGIMASCLVEL---VLMTWLL 406
           +A  I+      +  L+++ F T     ++            M   LV L   + + W+ 
Sbjct: 357 RATLIIGLLLTALSLLLAVFFETLFSFTIMLTTQ--------MTQPLVALGIAIYLGWIW 408

Query: 407 KISDVRKYVNSISDF-SVGVWFDICLRFVSPVILAIIVATKLQ 448
           + S + K ++      + G+++ I  R+V  V   +I+A  ++
Sbjct: 409 RQSQLLKAISKQEGVDATGLFWRIWPRYVKYVCPVLIIAIAIR 451