Pairwise Alignments

Query, 486 a.a., sodium-dependent transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 456 a.a., Na+-dependent transporter (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  241 bits (615), Expect = 4e-68
 Identities = 153/463 (33%), Positives = 245/463 (52%), Gaps = 35/463 (7%)

Query: 3   REQWGSRVGFVLAAVGSAIGLGNIWRFPYMAYENGGGAFFIPYLFAMVTAGIPFMILEFS 62
           R  +GS++G +LA+ GSA+GLGNIWRFPY    +GG AF + YL  +   G+P +I EF 
Sbjct: 6   RANFGSKLGVILASAGSAVGLGNIWRFPYETGNHGGAAFILIYLGCVFLLGLPILIAEFL 65

Query: 63  MGQKHRGSAPTTLAKI--HSKFEWLGWFQVGIAAVIAVYYVAVIGWAISYFGMSFTQSWG 120
           +G++ R +      K+   + + W+G   V  A +I  YY  V GW + Y   + T  + 
Sbjct: 66  IGRRSRANTAGAYQKLAPGTHWRWVGRMGVLAAFLILSYYSVVAGWTLEYVYEALTNGFT 125

Query: 121 SDTNAYFFSEYLKLGDNSPTNLGSIQWHIAFAMLIAWVITYAAIVGGVKKGIERASKIMM 180
             T   F S +            S  W     +++  ++T+  IV GV+KGIE++SKIMM
Sbjct: 126 GKTPTEFISSF--------QQFSSSPWRPVLWLVLFLLVTHFIIVKGVEKGIEKSSKIMM 177

Query: 181 PILFIMVLILIARMIFLPGALDGVNYMFQPDFSKIWDVKVWAAAYGQIFFTLSIGFAIML 240
           P LFI++LIL+   + LPGA  G+ ++ +PDFSK+ D  V+ +A GQ FF+LS+G   + 
Sbjct: 178 PTLFIIILILVICSVTLPGAGAGIEFLLKPDFSKV-DGNVFLSAMGQAFFSLSLGMGCLC 236

Query: 241 AYSSYLPEKSDITNNAFMTVLINCGFSVLAGIMIFSVLGYMAQEQGKPLTEVVSAGVGLA 300
            Y+SY  +++++T  AF   +I+   +VLAG +IF     +  +          AG  L 
Sbjct: 237 TYASYFSKETNLTKTAFSVGIIDTFVAVLAGFIIFPAAFSVGIQP--------DAGPSLI 288

Query: 301 FVTLP----AAINLLPI-PYILGPLFFLALVVAGLSSHISIMEAVTSALIDKLGWSRKKA 355
           F+TLP     A + +PI  YI   +F++ L +A L+S IS+ E VT+ L ++  ++R KA
Sbjct: 289 FITLPNVFQQAFSGVPILAYIFSVMFYVLLAMAALTSTISLHEVVTAYLHEEFNFTRGKA 348

Query: 356 ANIVIG----IGFLVSMAFA-----TNGGLLLLDLVDHFANNVGIMASCLVELVLMTWLL 406
           A +V G    +G L S++       T  GL + DL D     + +    L   +   W L
Sbjct: 349 ARLVTGGCIFLGILCSLSLGVMKGFTIFGLGIFDLFDFVTAKIMLTLGGLCISIFTGWYL 408

Query: 407 KISDVRKYVNSISDFSVGVW--FDICLRFVSPVILAIIVATKL 447
               V   + +     V V+      LR+++P+ +++I   +L
Sbjct: 409 DKKIVWSEITNDGSLKVPVYKLIIFILRYIAPIAISLIFINEL 451