Pairwise Alignments

Query, 405 a.a., ROK family protein from Vibrio cholerae E7946 ATCC 55056

Subject, 406 a.a., DNA-binding transcriptional dual regulator NagC from Klebsiella michiganensis M5al

 Score =  332 bits (851), Expect = 1e-95
 Identities = 169/401 (42%), Positives = 267/401 (66%), Gaps = 2/401 (0%)

Query: 4   AQPGHIDHIKQINAGRVYKLIDQKGPISRIDLSKESELAPASITKITRELIDAHLIHETT 63
           AQ G++D +KQ+N+  VY+LIDQ GPISRI ++++S+LAPAS+TKITR+LI+  LI E  
Sbjct: 7   AQIGNVDLVKQLNSAAVYRLIDQHGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVD 66

Query: 64  VQEAISRGRPAVGLQTNNLGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHEIDQDDV 123
            Q+A + GR A+ +      +  + +RLGR   T+ L++L  + L +    + E  Q+ +
Sbjct: 67  -QQASTGGRRAISIVAETRSFHAIGVRLGRYDATLTLYDLSSKTLEEEHYPLPERTQETL 125

Query: 124 LARLLFEIEEFFQTYAAQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVKNLALGPEIYKA 183
              LL  I  F ++   ++  + +I++ LPGLV+ E G++  MPH  V+N  L   + K 
Sbjct: 126 EHALLNIIAAFMESCQRKIRELIAISVILPGLVDPESGVIRYMPHIQVENWGLVEALEKR 185

Query: 184 TGLPVFVANDTRAWALAEKLFGHSQDVDNSVLISIHHGLGAGIVLDGRVLQGRHGNIGEL 243
             +  +V +D R+ ALAE  FG S D ++S+L+ +H G GAGI+ +GR+  GR+GN+GE+
Sbjct: 186 FKVTCYVGHDIRSLALAEHYFGASHDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEI 245

Query: 244 GHIQIDPQGKRCHCGNYGCLETVASSQAIRDQVTARIQAGEPSCLATVEEISIEDICAAA 303
           GHIQ+DP G+RCHCGN+GCLETVA++ AI  +V   ++ G  S + ++++ +I+ IC AA
Sbjct: 246 GHIQVDPLGERCHCGNFGCLETVAANAAIEHRVRHLLEQGYQSKI-SLDDCTIKTICKAA 304

Query: 304 ADGDPLAVDVIQQLGRYLGAAIAIVINLFNPEKILIGGVINQAKSILYPSIEQCIREQSL 363
             GD LA +VI+ +GR+LG  IAI INLFNP+K++I G I +A+ +L P+IE CI  Q+L
Sbjct: 305 NKGDALACEVIEHVGRHLGKTIAIAINLFNPQKVVIAGEIVEAEKVLLPAIEACINTQAL 364

Query: 364 PVYHQDLKLVESRFYKQATMPGAALIKQALYDGLLLMKVVE 404
             + ++L +V S    ++ +   AL+K+A+ +G LL +++E
Sbjct: 365 KAFRKNLPVVRSTLDHRSAIGAFALVKRAMLNGTLLQRLLE 405