Pairwise Alignments

Query, 314 a.a., chemotaxis protein CheV from Vibrio cholerae E7946 ATCC 55056

Subject, 533 a.a., CheW protein (NCBI) from Rhodospirillum rubrum S1H

 Score = 60.5 bits (145), Expect = 9e-14
 Identities = 39/142 (27%), Positives = 75/142 (52%), Gaps = 3/142 (2%)

Query: 18  NRLELLLFSLNSRQIFAINVFKVREVIKVPLLTKMPGSHPHITGVASLRGEPVPVIDLRS 77
           N  + ++F +++  +FA+ + +V+E+I++P +  +P S   + G+A+LRG  +PVI LR 
Sbjct: 31  NARQFVIFHVDN-DLFAVPLSEVQEIIRMPDVVCVPLSPAALEGLANLRGSVLPVIRLRH 89

Query: 78  AIGFPPRRVQDTEQNLIITEYNRTIQGFLVGQVRNIINTAWTEIQPPPKSAGRANYLTAF 137
             G  P  V D    +++ +  R + G +V +V N+++     I+P     G  +     
Sbjct: 90  VFGMAP-VVHDDATRVVVLDQGRPV-GLVVDRVANVVSVEADHIEPSGAIGGTVDTDLLT 147

Query: 138 THVKEQDKTHIVEIIDVEKVLA 159
             +K      +V I+D  KV+A
Sbjct: 148 GMIKGDGDRAMVMILDAAKVVA 169



 Score = 53.9 bits (128), Expect = 8e-12
 Identities = 44/157 (28%), Positives = 72/157 (45%), Gaps = 12/157 (7%)

Query: 3   GVLNTVDQRTNLVGENRLELLLFSLNSRQIFAINVFKVREVIKVPL-LTKMPGSHPHITG 61
           G L T D     V         F L + + + + +  V+E+++VP  LT++P +   I G
Sbjct: 375 GYLGTTDDEEQFVA--------FRLMNEE-YGVPIDSVQEIVRVPEELTRVPKTPDFIEG 425

Query: 62  VASLRGEPVPVIDLRSAIGFPPRRVQDTEQNLIITEYNRTIQGFLVGQVRNIINTAWTEI 121
           V +LRG  +PV+D R   G P     D  Q +++        GF+V  V  +I    + I
Sbjct: 426 VVNLRGVVLPVVDQRRRFGLPGMERND-RQRIMVYTIRGVRTGFIVDSVSEVIRIPASLI 484

Query: 122 QPPPKSAGRANYLTAFTHVKEQDKTHIVEIIDVEKVL 158
            P P  +     L       E+ K  I+ ++DVE++L
Sbjct: 485 GPAPVLSDEQQRLIRRVANIEKQKRMIL-LLDVEQLL 520



 Score = 51.6 bits (122), Expect = 4e-11
 Identities = 29/126 (23%), Positives = 67/126 (53%), Gaps = 9/126 (7%)

Query: 16  GENRLELLLFSLNSRQIFAINVFKVREVIKVP-LLTKMPGSHPHITGVASLRGEPVPVID 74
           G++  +L+ F +  ++ +A+ + +V+E++++P L+T +P +  H+ GV +LR   +P++ 
Sbjct: 201 GDDESQLVSFEVAGQE-YALPIERVQEIVQIPGLITDVPNTPAHVLGVMTLRNRLLPLVG 259

Query: 75  LRSAIGFPPRRVQDTEQNLIIT------EYNRTIQGFLVGQVRNIINTAWTEIQPPPKSA 128
           LR   G P   + +T + ++++         R++ G ++  V+ ++      I P P   
Sbjct: 260 LREMFGLPTLALTETNKIVVVSLEGGAGGSGRSV-GVVMDSVKEVLRVGHALIDPMPALL 318

Query: 129 GRANYL 134
            R   L
Sbjct: 319 ARTGNL 324