Pairwise Alignments

Query, 325 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 454 a.a., PDZ domain protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score = 58.2 bits (139), Expect = 4e-13
 Identities = 45/143 (31%), Positives = 63/143 (44%), Gaps = 6/143 (4%)

Query: 55  GERISLQRLPAEIENADVILVGEWHTHAGIHRFQTDLLKQMTENGHPMVLSMEQFTRDAQ 114
           G  I+   +   +  AD ILVGE HT    HR Q  LL+ +T+ G   V+ +E       
Sbjct: 67  GSLIASSDVVRRLAGADYILVGESHTSPCDHRQQARLLRLLTDAGLRPVVGLEMLPTATN 126

Query: 115 PLMDDYLTGKIGEQYLIQKANAWPNYESD---YRPLVEFAKSQQLPVIAANAPKPIVRCI 171
           P +     G +G   L    +   N+  D   YRP+ E   S  LPV   N P  + R  
Sbjct: 127 PALWRLSAGSLGIDALPDAVDWRTNWGYDFALYRPVFEVIASAGLPVRGLNLPAGLARKA 186

Query: 172 GRVGIDYLDRLSPEQRQWVATEV 194
           GR G   L+ L P +R  + + V
Sbjct: 187 GREG---LEGLPPAERALIPSVV 206