Pairwise Alignments

Query, 616 a.a., signal peptide peptidase SppA from Vibrio cholerae E7946 ATCC 55056

Subject, 329 a.a., Periplasmic serine proteases (ClpP class) from Pseudomonas fluorescens FW300-N2E2

 Score = 95.5 bits (236), Expect = 3e-24
 Identities = 85/282 (30%), Positives = 132/282 (46%), Gaps = 28/282 (9%)

Query: 304 YNAIGYYEYKTTIKPTTLTDANDIAVVVASGAIMDGSQPRGTVGGDTVAGLLREARNDSN 363
           + A+  +     ++ + +  +   A++   G I D    +     D + G LR A  D  
Sbjct: 54  FGALALFTPLMNMEKSAVAGSAYTALINIEGMIAD----KEPASADNIVGSLRAAFEDPK 109

Query: 364 VKAVVLRVDSPGGSAFASEVIRNEIEALKA--AGKPVVVSMSSLAASGGYWISMSADKIV 421
           VK VVLR++SPGGS   S  + +EI  L+A      V   +S L ASG Y+I+ +AD+I 
Sbjct: 110 VKGVVLRINSPGGSPVQSGYVYDEIVRLRALHPDTKVYAVISDLGASGAYYIASAADQIY 169

Query: 422 AQPTTLTGSIGIFSVITTFEKGLNNLG----IYTDGVGTT---PFSGQ-GLTTGLTQGAK 473
           A   +L GSIG+ +    F   ++ LG    +YT G   +   PF  Q    T   QG  
Sbjct: 170 ADKASLVGSIGVTATGYGFVGTMDKLGVERRVYTSGEHKSFLDPFQPQKPEETAFWQGVL 229

Query: 474 DAIQLGIEHGYQRFISLVAEKRGLTLKAVD--ELAQGRVWTAQDAQTLGLVDQLGDFDDA 531
           D         +++FI+ V + RG  LK  +  EL  G VW+ + A  LGL+D LG    A
Sbjct: 230 DTT-------HKQFIASVKKGRGERLKDKEHPELFSGLVWSGEQALPLGLIDGLG---SA 279

Query: 532 VHLAADLAQLDQYNLYWVEEPLTPAQQFLQDLLGQVRVSLGL 573
             +A D+        + +EE  +P  +F + L   +   L +
Sbjct: 280 SSVARDVIGQKDLVDFTIEE--SPFDRFSKKLGASIAEHLAM 319



 Score = 46.2 bits (108), Expect = 2e-09
 Identities = 36/120 (30%), Positives = 55/120 (45%), Gaps = 4/120 (3%)

Query: 96  DIVETLRHAKNDNNVTGLVLALGDMPETNLTKLRYIAKAINEFKA---SGKPVFAVGDFY 152
           +IV +LR A  D  V G+VL +   P  +  +  Y+   I   +A     K    + D  
Sbjct: 96  NIVGSLRAAFEDPKVKGVVLRINS-PGGSPVQSGYVYDEIVRLRALHPDTKVYAVISDLG 154

Query: 153 NQSQYYLASYADKIYLAPDGAVLLKGYSAYSMYYKTLLEKLDVTTHVFRVGTYKSAIEPF 212
               YY+AS AD+IY      V   G +A    +   ++KL V   V+  G +KS ++PF
Sbjct: 155 ASGAYYIASAADQIYADKASLVGSIGVTATGYGFVGTMDKLGVERRVYTSGEHKSFLDPF 214