Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., ATP-dependent helicase DinG/Rad3 from Pseudomonas fluorescens FW300-N2E2

 Score =  128 bits (322), Expect = 8e-34
 Identities = 83/256 (32%), Positives = 131/256 (51%), Gaps = 7/256 (2%)

Query: 373 LHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPSAQFSLV-SPFDY 431
           ++ +P+  A+  R  +       + TSATL     F  F  R GL   A  ++V SPF +
Sbjct: 457 VNASPILAAEMLRRNLWNVAYGALVTSATLTALGTFDRFRMRAGLPKKAVTAVVPSPFHH 516

Query: 432 QQQAVLCVPRYLPEPNSSGL-AEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFRER 490
               VL VP    +P  +      ++R L  ++E ++G    L +S   M+D+ +     
Sbjct: 517 ADAGVLRVPDLKADPRDAAAHTAAIIRDLPELVEGSRGT-LVLFSSRKQMQDVFDGLDRD 575

Query: 491 LTLPVLMQGETSKQKTLAEFMEL----GNALLVATGAFWEGIDVRGDTLSCVIIDKLPFT 546
               V +QG  SKQ+TL +         +++L    +F EG+D+ G     V+I K+PF+
Sbjct: 576 WRKQVFIQGNLSKQETLNKHKARVDGGDSSVLFGLASFAEGVDLPGAYCEHVVIAKIPFS 635

Query: 547 APDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVT 606
            PDDP+  A  E    RGG+PF ++ +P+A + L Q  GRL+R + D+G + + D RLVT
Sbjct: 636 VPDDPVEAALAEWIEARGGNPFMEISVPDASLKLVQACGRLLRTEEDRGTITLLDRRLVT 695

Query: 607 RDYGGVFLASLPPIPR 622
           + YG   L +LPP  R
Sbjct: 696 QRYGKAILNALPPFRR 711



 Score =  119 bits (298), Expect = 5e-31
 Identities = 92/302 (30%), Positives = 142/302 (47%), Gaps = 53/302 (17%)

Query: 42  LVVEAGTGTGKTFAYLVPAL----LSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQ 97
           + VEAGTGTGKT AY + A+     +GK+++I+T +  LQEQ+ ++DLP ++   G    
Sbjct: 58  VAVEAGTGTGKTVAYSLAAIPTAKAAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFT 117

Query: 98  VALLKGRANYLCLDRLSRQMVESH-----------------TPESDPTLLTQLVKVRSWA 140
            AL KGR  Y+CL +L   + E H                   E+   L T +++    A
Sbjct: 118 FALAKGRGRYMCLSKLDMLLQEGHAQTATAQLFEEEGFKIEVDEASQKLFTSMIE--KLA 175

Query: 141 SSTQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVN 200
            +   GD        ED+     +T+ +  C  + C ++  C   KAR      DV+V N
Sbjct: 176 GNKWDGDRDSWSTALEDAD-WSRLTTDHSQCTNRHCPNFGQCAFYKAREGMGKVDVIVTN 234

Query: 201 HHLFLADLAIKETGFGELIPEAE--VFIFDEAHQLPDIASQYFGQSVSSRQVQDLAKDIE 258
           H + LADLA+   G G ++P+    +++FDE H LPD A  +F      R   D  +   
Sbjct: 235 HDMVLADLAL---GGGAVLPDPRDTIYVFDEGHHLPDKAIGHFAHYTRLRSTADWLE--- 288

Query: 259 LGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWREVLKVPTVAREVERLNEAL 318
               T AK++ +L      L Q  +        PG  G + E  +VP +ARE+ + N+  
Sbjct: 289 ----TTAKNLTKL------LAQHPL--------PGDLGKFIE--QVPELAREI-KTNQQF 327

Query: 319 QF 320
            F
Sbjct: 328 MF 329