Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., Rad3-related DNA helicases from Pseudomonas stutzeri RCH2

 Score =  128 bits (322), Expect = 8e-34
 Identities = 84/256 (32%), Positives = 131/256 (51%), Gaps = 7/256 (2%)

Query: 373 LHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPSAQFSLV-SPFDY 431
           ++ +P+  A+  R  +       + TSATL     F  +  R GL   A  ++V SPF +
Sbjct: 457 VNASPILAAETLRRNLWNVAFGALVTSATLTALNSFDRYRMRAGLPKGAVTAVVPSPFHH 516

Query: 432 QQQAVLCVPRYLPEPNSSGL-AEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFRER 490
               VL VP    +P  +      +VR L  ++E  +G    L +S   M+D+ +     
Sbjct: 517 ADAGVLRVPDLKADPRDAAAHTAAIVRELPALVEGARGT-LVLFSSRKQMQDVFDGLERD 575

Query: 491 LTLPVLMQGETSKQKTL----AEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFT 546
               VL+QG  SKQ+TL    A   +  +++L    +F EG+D+ G     V+I K+PF 
Sbjct: 576 WRRRVLIQGNLSKQETLNKHKARVDDGESSVLFGLASFAEGVDLPGAYCEHVVIAKIPFA 635

Query: 547 APDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVT 606
            PDDP+  A  E    RGG+PF ++ +P+A + L Q  GRL+R + D+G + + D R+VT
Sbjct: 636 VPDDPVEAALAEWIGARGGNPFMEIAVPDASLRLVQACGRLLRTETDRGTITLLDRRVVT 695

Query: 607 RDYGGVFLASLPPIPR 622
           + YG   L +LPP  R
Sbjct: 696 QRYGKAILNALPPFRR 711



 Score =  121 bits (303), Expect = 1e-31
 Identities = 77/238 (32%), Positives = 114/238 (47%), Gaps = 25/238 (10%)

Query: 42  LVVEAGTGTGKTFAYLVPAL----LSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQ 97
           + VEAGTGTGKT AY + A+     +GK+++I+T +  LQEQ+ H+DLP ++   G    
Sbjct: 58  VAVEAGTGTGKTVAYSLAAIPTAKAAGKRLVIATATVALQEQIVHKDLPDLMRNSGLNFS 117

Query: 98  VALLKGRANYLCLDRLSRQMVESHTPESDPTLLTQ---------------LVKVRSWASS 142
            AL KGR  YLCL +L   + E     +   L  +                  +   A +
Sbjct: 118 FALAKGRGRYLCLSKLDLLLQEGQAQSATAQLFEEEGFRIEVDERSQKLFTSMIEKLAGN 177

Query: 143 TQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVVNHH 202
              GD     +   DS     +T+ +  C G+ C ++Q C   KAR      DV+V NH 
Sbjct: 178 RWDGDRDSWPEELGDSD-WSQLTTDHSQCTGRHCPNFQQCAFYKAREGMTKVDVIVTNHD 236

Query: 203 LFLADLAIKETGFGELIPEAE--VFIFDEAHQLPDIASQYFGQSVSSRQVQDLAKDIE 258
           + LADLA+   G G ++P+    +++FDE H LPD A  +F      R   D    +E
Sbjct: 237 MVLADLAL---GGGAVLPDPRETIYVFDEGHHLPDKAIGHFAHFTRLRSTADWLGQVE 291