Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 714 a.a., Helicase c2 from Pseudomonas syringae pv. syringae B728a

 Score =  125 bits (314), Expect = 7e-33
 Identities = 83/256 (32%), Positives = 133/256 (51%), Gaps = 7/256 (2%)

Query: 373 LHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPSAQFSLV-SPFDY 431
           ++ +P+  A+  R  +       + TSATL     F  +  R GL   A  ++V SPF +
Sbjct: 457 VNASPILAAEMLRRNLWNIAYGALVTSATLTALGKFDRYRMRAGLPKGAVTAVVPSPFHH 516

Query: 432 QQQAVLCVPRYLPEPNSS-GLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFRER 490
               VL VP    +P  S      ++R L  ++E ++G    L +S   M+D+ +     
Sbjct: 517 ADAGVLRVPDLKADPRDSVAHTAAIIRDLPGLVEGSRGT-LVLYSSRKQMQDVFDGLDRD 575

Query: 491 LTLPVLMQGETSKQKTLAEF---MELG-NALLVATGAFWEGIDVRGDTLSCVIIDKLPFT 546
               V +QG  SKQ+TL +    ++ G +++L    +F EG+D+ G     V+I K+PF 
Sbjct: 576 WRKQVFIQGNLSKQETLNKHKARVDSGESSVLFGLASFAEGVDLPGAYCEHVVIAKIPFA 635

Query: 547 APDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVT 606
            PDDP+  A  E    RGG+PF ++ +P+A + L Q  GRL+R + D+G + + D R+VT
Sbjct: 636 VPDDPVEAALAEWIEARGGNPFMEIAVPDASLRLVQACGRLLRTEEDRGTITLLDRRVVT 695

Query: 607 RDYGGVFLASLPPIPR 622
           + YG   L +LPP  R
Sbjct: 696 QRYGKAILNALPPFRR 711



 Score =  114 bits (285), Expect = 2e-29
 Identities = 86/296 (29%), Positives = 141/296 (47%), Gaps = 56/296 (18%)

Query: 42  LVVEAGTGTGKTFAYLVPAL----LSGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQ 97
           + VEAGTGTGKT AY + ++     +GK+++I+T +  LQEQ+ ++DLP ++   G    
Sbjct: 58  VAVEAGTGTGKTVAYAIASIPTAKAAGKRLVIATATVALQEQIVYKDLPDLMRNSGLNFT 117

Query: 98  VALLKGRANYLCLDRLSRQMVES-----------------HTPESDPTLLTQLVKVRSWA 140
            AL KGR  Y+CL +L   + ES                    E+   L T +  ++  A
Sbjct: 118 FALAKGRGRYMCLSKLDALLQESDATNATAQLFEEEGFKIEVDEASQKLFTSM--LQKLA 175

Query: 141 SSTQSGDLGEC-DDLAEDSPIIPTITSTNDNCLGKECASYQDCFVSKARRRAMDADVVVV 199
            +   GD      +LA+       +T+ +  C  + C ++Q C   KAR      DV+V 
Sbjct: 176 GNKWDGDRDSWPQELADQD--WARLTTDHSQCTNRHCPNFQQCAFYKAREGMGKVDVIVT 233

Query: 200 NHHLFLADLAIKETGFGELIPEAE--VFIFDEAHQLPDIASQYFGQSVSSRQVQDLAKDI 257
           NH + LADLA+   G G ++P+    +++FDE H LPD A  +F                
Sbjct: 234 NHDMVLADLAL---GGGAVLPDPRDTLYVFDEGHHLPDKAIGHFAH-------------- 276

Query: 258 ELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWREVL-KVPTVAREVE 312
                       +L+  +D L Q A +L  +L +    G+  +++ +VP +ARE++
Sbjct: 277 ----------YTRLKSTADWLEQTAKNLAKLLAQHPLPGDLGKLIEQVPELAREIK 322