Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 691 a.a., ATP-dependent DNA helicase DinG (RefSeq) from Shewanella amazonensis SB2B

 Score =  221 bits (563), Expect = 8e-62
 Identities = 196/682 (28%), Positives = 310/682 (45%), Gaps = 81/682 (11%)

Query: 12  LGQAIPGFQPRQAQVDMAKAVASAIANQSQ-----LVVEAGTGTGKTFAYLVP----ALL 62
           +  A+P F+ R+ Q  M   ++  +A +       +VVEAGTG GK+ +Y++     AL 
Sbjct: 17  IAAALPNFRSRREQNYMVAEISKTLAGEYDKHRRIIVVEAGTGIGKSLSYILGTIPLALT 76

Query: 63  SGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHT 122
             KKV I+T +  LQEQL H+DLP  ++  G   +  L+KGR  Y+CL +L   + +++ 
Sbjct: 77  QKKKVCIATATVALQEQLLHKDLPFFLAQSGLNFRFGLVKGRQRYVCLAKLEMLIGDNNG 136

Query: 123 PES-------DPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSP--IIPTITSTNDNCLG 173
            +        D   +  L K+ S          GE D L    P  +   I     +C  
Sbjct: 137 TQMAMWQTKPDTAQVEMLQKLHSDFHKGLWN--GEIDTLETPIPDHLWQQIACDKHSC-H 193

Query: 174 KECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAE--VFIFDEAH 231
           ++ AS++ C   KAR      DV++ NH L  ADL   E G G ++P+ E   ++ DEAH
Sbjct: 194 RQNASHRQCPFHKAREDVDTWDVLIANHSLLFADL---ELGGGIILPDPEEMFYVIDEAH 250

Query: 232 QLPDIASQYFGQSVSSRQVQDLAKDIELGYRTEAKDMRQL---------QKVSDKLVQAA 282
            LP +A  +     + R   D  + I    +T AK   Q+         Q + D +   A
Sbjct: 251 HLPVVARDFSSAQATLRGAADWLEKIG---KTAAKLQNQIKSNNIIAPSQAMQDHVADIA 307

Query: 283 MDLRIVL----GEPGYRGNWREVLK-----VPTVA-REVERLNEALQFAL---DVLKLAL 329
             L  V     GE     N    L+     +P V  R  E L  A   AL   + ++L L
Sbjct: 308 GMLNQVAHYCDGEKARFDNPENRLRFTHGALPEVLKRHAENLATATSGALKQFNKMQLLL 367

Query: 330 GRS--------QLLDTAFERATLILGRIRRVCDV--------SVTGY--SYWYDTTPRH- 370
           G +           DT       +L R+  +  +        S  G   + W +  P + 
Sbjct: 368 GEAIKDGDIPRHQADTLQTETGFMLQRLENLHKLWKMMAKEDSKKGAPTARWIELLPANK 427

Query: 371 ---FSLHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLT---PSAQFS 424
              + L  +P+ V       +  K    +  SATL     F +F  ++GL+    S   +
Sbjct: 428 QVDYLLCASPIEVGFMLESMLWEKAAGVVLCSATLRALNQFDYFAHQVGLSLHDGSRYLA 487

Query: 425 LVSPFDYQQQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLG 484
           L SPFD++  A L +P+   EP      ++L   +  + EH       L  S+  M  + 
Sbjct: 488 LQSPFDFENNATLYLPKMRTEPTDDNYTDELAEHILKLTEHEMAS-LVLFASYWQMEKVA 546

Query: 485 ERFRERLTLPVLMQGETSKQKTLAEFMELGN----ALLVATGAFWEGIDVRGDTLSCVII 540
           +    +L +P+L+QG + +Q  L    +  +    +LL  TG+F EG+D+ G+ L+ +I+
Sbjct: 547 DIIGPKLKIPLLIQGNSPRQLLLDSHKKRCDEGKPSLLFGTGSFSEGLDLPGEYLTNLIV 606

Query: 541 DKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIIC 600
            KLPF  P  P+ +A  E  + +GG+PF Q+ +P+A   L Q  GRL+R + D G + I 
Sbjct: 607 TKLPFAVPTSPVEQAHAEYIKEKGGNPFLQLTIPDASRKLIQSCGRLLRKEQDYGRITIL 666

Query: 601 DNRLVTRDYGGVFLASLPPIPR 622
           D RLV++ YG   L +LPP  R
Sbjct: 667 DRRLVSKRYGKSLLDALPPYRR 688