Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 927 a.a., Helicase c2 (NCBI) from Rhodospirillum rubrum S1H

 Score = 90.1 bits (222), Expect = 4e-22
 Identities = 99/350 (28%), Positives = 147/350 (42%), Gaps = 46/350 (13%)

Query: 12  LGQAIPGFQPRQAQVDMAKAVASAIANQSQ------LVVEAGTGTGKTFAYLVPALLSGK 65
           LGQ   G + R  Q D A A+  A   ++       ++ EAGTG GKT  Y+ PA L  +
Sbjct: 216 LGQ---GAEARPQQADYASALCVAFQPRATPDWPTLVLAEAGTGVGKTLGYIAPASLWAE 272

Query: 66  K----VIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESH 121
           +    V IST ++NLQ QL      L         +V + KGR NYLCL      +    
Sbjct: 273 RNEGTVWISTYTRNLQRQLDGELDRLYPDPAEKMRKVVIRKGRENYLCLLNYEEAVGRLG 332

Query: 122 TPESDPTLLTQLVKVRSWASSTQSGDL--GE-----CDDLAEDSPIIPTITSTNDNCLGK 174
               +   L  + +   W  +T+ GD+  G+      D L  +  +   +      C+  
Sbjct: 333 ATPQEAVALGLMAR---WIKATRDGDMVGGDFPGWMVDILGRERSL--ALADRRGECVFS 387

Query: 175 ECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLP 234
            C  Y  CF+ +A RRA  A +VV NH L L   A+   G  +       +I DE H + 
Sbjct: 388 SCDHYDRCFIERAVRRARRARLVVANHALVLIQAAL---GGIDDDSRPTRYILDEGHHVF 444

Query: 235 DIASQYFGQSVSSRQVQDLAK---DIELGYRTEAKDM-RQLQKVSDKLVQAAMDLRIVL- 289
           D A   F   +S  +  +L +     E G+R+ A+ + R++  + D+    A DL   L 
Sbjct: 445 DAADSAFSAHLSGFEGAELRRWLLGAEEGHRSRARGLRRRVDGLYDQAGPLAADLEEALD 504

Query: 290 GEPGYRG-NWREVLKVPTVAREVERLNEALQFALDVLKLALGRSQLLDTA 338
           G     G  W + L   T    +ER             LA  R+Q+L  A
Sbjct: 505 GARALPGPGWAQRLAGGTGRGAIERF------------LATARTQVLARA 542



 Score = 58.2 bits (139), Expect = 2e-12
 Identities = 69/244 (28%), Positives = 108/244 (44%), Gaps = 26/244 (10%)

Query: 384 FREQIALKEGAWIFTSATLAVNE-----DFSHFTERLGL----TPSAQFSLVSPFDYQQQ 434
           F   +A +    + TSATL         D+     R G     TP+ + S+ SPFDY   
Sbjct: 668 FAATLAARAHGLVVTSATLRDGSGDGEADWLSAEARAGAPHLGTPAIRASVPSPFDYPAT 727

Query: 435 AVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFR---ERL 491
             + V   +   +     +++      +     G    L T+   +R +  R     + L
Sbjct: 728 TRVLVITDVKRDD----LDQVSAAYRELFRAAGGGGLGLFTAIGRLRAVHARIAPALDAL 783

Query: 492 TLPVLMQGETSKQ-KTLAE-FMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAPD 549
            LP+L Q   +    TL E F    +A L+ T A  +G+DV G +L  ++ D++P+  P 
Sbjct: 784 GLPLLAQHVDAMDISTLIEIFRAEEDACLLGTDAVRDGVDVPGRSLRLIVFDRVPWPRP- 842

Query: 550 DPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRDY 609
           D L KAR    +  GG  +       A + LKQ  GRL+R   D+G  ++ D+RL +R  
Sbjct: 843 DILHKAR---RKAMGGSLYDD---RIARLRLKQAFGRLVRRAGDRGVFVMLDSRLPSR-L 895

Query: 610 GGVF 613
           GG F
Sbjct: 896 GGAF 899