Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 633 a.a., ATP-dependent helicase, DinG family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  553 bits (1426), Expect = e-162
 Identities = 296/636 (46%), Positives = 401/636 (63%), Gaps = 9/636 (1%)

Query: 4   KTFSQQGALGQAIPGFQPRQAQVDMAKAVASAIANQSQLVVEAGTGTGKTFAYLVPALLS 63
           + F+  G L + I GF  RQ+QV MA+ +++AIA++   V+EAGTG GKTFAYL+PA+LS
Sbjct: 3   RAFASDGVLAKHIQGFSARQSQVQMAQIISNAIASKGNAVIEAGTGVGKTFAYLIPAMLS 62

Query: 64  GKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRLSRQMVESHTP 123
           GK+VI+STGSKNLQEQLF +DLP + + LG   ++ALLKGR NYLC  RL RQM E+   
Sbjct: 63  GKQVIVSTGSKNLQEQLFLKDLPALTAMLGIAPKLALLKGRNNYLCQYRLDRQMQEASHI 122

Query: 124 ESDPTLLTQLVKVRSWASSTQSGDLGECDDLAEDSPIIPTITSTNDNCLGKECASYQDCF 183
           E+   LL  L+K+  WA  ++ GD+G    +AE+SP +P + ST + CLG+ C  Y  CF
Sbjct: 123 EA--RLLDDLLKINQWAGMSKDGDIGGLTSVAENSPALPLVVSTKETCLGQRCEFYDACF 180

Query: 184 VSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAEVFIFDEAHQLPDIASQYFGQ 243
             KAR RAMDA ++VVNHHLF AD  +K+TGF EL+P+ +V IFDEAH LPDI   YFGQ
Sbjct: 181 TRKARSRAMDAKIIVVNHHLFFADSVLKDTGFAELLPDPDVVIFDEAHLLPDICVSYFGQ 240

Query: 244 SVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVLGEPGYRGNWREVLK 303
             SSR + D  + +   Y+TE  D  Q+ +   + +    D    L       +WR +L 
Sbjct: 241 QSSSRTIDDYLQKLLQIYQTELSDTGQIAQFCQRCLAKLSDWHNGLFSIA-ESDWRVLLG 299

Query: 304 VPTVAREVERLNEALQFALDVLKLALGRSQLLDTAFERATLILGRIRRV--CDVSVTGYS 361
             ++A     L   L     +L   +GRS+LLD    +   +  ++     CD     YS
Sbjct: 300 NKSIALASWDLLAELTALQKLLLAHVGRSELLDDIAVKLAELNHKLNHFFQCDNPQAAYS 359

Query: 362 YWYDTTPRHFSLHITPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTPSA 421
             + +  R   L I+P+++A +  +Q+ +   +WIFTSATL VN   +HF + LG++ + 
Sbjct: 360 VEFGS--RFVMLRISPINIAREC-QQLFVANTSWIFTSATLQVNRSLAHFAKELGISDAK 416

Query: 422 QFSLVSPFDYQQQAVLCVPRYLPE-PNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMM 480
              L SPFDY +QA+ CVPR L    N     ++LV +    IE  QGR F L TSH M+
Sbjct: 417 AHILDSPFDYPRQALFCVPRQLGNVANQQQALKQLVDVCVKAIEAAQGRTFILFTSHKML 476

Query: 481 RDLGERFRERLTLPVLMQGETSKQKTLAEFMELGNALLVATGAFWEGIDVRGDTLSCVII 540
                  R R   P+L+QG+  KQ  L +F +LGNA+L+ T +FWEG+DVRG  LSCVII
Sbjct: 477 EQTALALRTRTQYPLLVQGQAGKQSLLTKFRQLGNAVLLGTSSFWEGVDVRGKLLSCVII 536

Query: 541 DKLPFTAPDDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIIC 600
           DKLPF +PD+PL +AR ++   +GGDPF QV LP+A+I LKQGVGRLIRD+ D G LI+C
Sbjct: 537 DKLPFVSPDEPLYRARADNISRQGGDPFTQVSLPQAIIALKQGVGRLIRDEKDCGVLILC 596

Query: 601 DNRLVTRDYGGVFLASLPPIPRTRDLDVVTTFLQQL 636
           DNR+V R YG  FL SLPP+ RTRDL+    FL+Q+
Sbjct: 597 DNRIVNRAYGQAFLNSLPPMARTRDLEQALAFLRQI 632