Pairwise Alignments

Query, 646 a.a., ATP-dependent DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 690 a.a., ATP-dependent DNA helicase DinG (RefSeq) from Shewanella sp. ANA-3

 Score =  142 bits (357), Expect = 7e-38
 Identities = 86/254 (33%), Positives = 131/254 (51%), Gaps = 8/254 (3%)

Query: 376 TPLSVADKFREQIALKEGAWIFTSATLAVNEDFSHFTERLGLTP---SAQFSLVSPFDYQ 432
           +P+ V       +  K    +  SATL    +F HF  ++GL+    S   +L SPFDY 
Sbjct: 435 SPIEVGFMLESMLWQKAAGVVLCSATLRALNNFDHFAHQVGLSVKDGSRYLALQSPFDYP 494

Query: 433 QQAVLCVPRYLPEPNSSGLAEKLVRMLAPVIEHNQGRCFFLCTSHSMMRDLGERFRERLT 492
             A L +P+   EP       +L   +  +IE        L  S+  M  + E    +LT
Sbjct: 495 NNATLYLPKMKTEPTDDAYTAELAEHILELIEGEMAT-LVLFASYWQMEKVAELLEGKLT 553

Query: 493 LPVLMQGETSKQKTL----AEFMELGNALLVATGAFWEGIDVRGDTLSCVIIDKLPFTAP 548
             +L+QG   +Q+ L    A+  +   ++L  TG+F EG+D+ GD L+ +I+ KLPF  P
Sbjct: 554 QEILIQGNAPRQQLLETHKAKCDKGEPSILFGTGSFSEGLDLPGDYLTNLIVTKLPFAVP 613

Query: 549 DDPLLKARIEDCRLRGGDPFAQVQLPEAVITLKQGVGRLIRDKNDKGALIICDNRLVTRD 608
             P+ +A  E  +++GG+PF Q+ +P+A   L Q  GRL+R + D G + I D RLVT+ 
Sbjct: 614 TSPVEQAHAEYVKIKGGNPFLQLTIPDASRKLIQSCGRLLRKEQDYGRVTILDRRLVTKR 673

Query: 609 YGGVFLASLPPIPR 622
           YG   L +LPP  R
Sbjct: 674 YGKSLLDALPPFRR 687



 Score =  120 bits (302), Expect = 2e-31
 Identities = 94/302 (31%), Positives = 149/302 (49%), Gaps = 35/302 (11%)

Query: 12  LGQAIPGFQPRQAQVDMAKAVASAIANQSQ-----LVVEAGTGTGKTFAYLVP----ALL 62
           +  A+P F+PR+ Q  M   ++  +A         +VVEAGTG GK+ +Y++     AL 
Sbjct: 17  IAAALPNFRPRREQNFMVAEISKTLAGDYDKDRRIIVVEAGTGIGKSLSYILGTIPLALA 76

Query: 63  SGKKVIISTGSKNLQEQLFHRDLPLMVSALGFFGQVALLKGRANYLCLDRL--------S 114
           S KKV I+T +  LQEQL H+DLP  +   G   +  L+KGR  Y+CL +L        S
Sbjct: 77  SKKKVCIATATVALQEQLLHKDLPFFLEQSGLNFRFGLVKGRQRYVCLSKLAMLIGDDNS 136

Query: 115 RQMVESHTPESDPTLLTQLVKVRSWASSTQSGDL-GECDDLAEDSP--IIPTITSTNDNC 171
            QM    T   +    +Q+  ++   S    G   GE D L+   P  +   I     +C
Sbjct: 137 TQMAMWQTKPDN----SQIAMLQELLSDYNEGRWNGEIDTLSTPIPDHLWQQIACDKHSC 192

Query: 172 LGKECASYQDCFVSKARRRAMDADVVVVNHHLFLADLAIKETGFGELIPEAE--VFIFDE 229
             ++ AS+++C   KAR      DV++ NH L LADL   E G G ++P+ E   ++ DE
Sbjct: 193 -HRQLASHRNCPFHKAREDVDTWDVLIANHSLLLADL---ELGGGVILPDPEDVFYVIDE 248

Query: 230 AHQLPDIASQYFGQSVSSRQVQDLAKDIELGYRTEAKDMRQLQKVSDKLVQAAMDLRIVL 289
           AH LP +A  +     + R   D  + +    +T AK   Q++  S+ ++  A  ++  +
Sbjct: 249 AHHLPIVARDFSSAQATLRGAADWLEKVG---KTSAKLQNQIK--SNNIIAPAQAMQDHI 303

Query: 290 GE 291
           G+
Sbjct: 304 GD 305